Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq93 107 2e-18 >seq93 Length=584700 Score = 107 bits (118), Expect = 2e-18 Identities = 216/317 (68%), Gaps = 5/317 (2%) Strand=Plus/Plus Query 125923 TTTATACCGCAATAGGTGCTTTAATAGCAGGGTGTGATTCATAATTTATCAATTCTAAAT 125982 ||||||| |||| | | |||| ||||| || || | || |||| || | |||| Sbjct 272109 TTTATACAGCAACACTTCCTTTTATAGCTGGATGCGGATCGTAATCTACGAGAGTAAAAT 272168 Query 125983 CTTCATAATTAATATCAAAAATTGATTTA---TCTGTATTAATTTTTAATTGAGGTGGTA 126039 ||||||||| || ||||||||| |||| || | ||| | | | || ||| | Sbjct 272169 CTTCATAATCAAAATCAAAAATGTTTTTAATCTCAGGATTCAAAATCATTTTTGGTAATG 272228 Query 126040 GATAACTATCTCTTGATAATTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTG 126099 | | || | | |||||| | || || | ||||||| ||||| |||| Sbjct 272229 GTTTTGGTTCACGCGTTAATTGCAGTTCTAACTGTTCAAAATGATTGTTGTAAATGTGTG 272288 Query 126100 CATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCCACATTCTTTTGCAA-CAAGA 126158 | || ||||| || ||||| ||||||||| ||| | | || | | |||| || | Sbjct 272289 CGTCGCCAAAAGTGTGAATAAATTCACCCGGCTCTAAATCGCAAACCTGAGCAATCATCA 272348 Query 126159 TGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAATATATCAGCACTT 126218 | || | ||| |||||| |||||||| |||||||| |||||||||||||| |||||| Sbjct 272349 TA-GTAAATAAGGCATAAGAAGCAATATTAAAAGGAACTCCTAAAAATATATCGGCACTT 272407 Query 126219 CTTTGATATAATTGACA 126235 ||||| ||||| || || Sbjct 272408 CTTTGGTATAACTGGCA 272424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408531760410074