Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq3933 1840 0.0 seq10411 197 5e-46 seq2342 192 2e-44 seq3951 100 1e-16 >seq3933 Length=4962 Score = 1840 bits (2040), Expect = 0.0 Identities = 1197/1315 (91%), Gaps = 0/1315 (0%) Strand=Plus/Minus Query 2205 GTACTGTTTTCCCCATGCCAGGGCTTTGGCGTTAACTTCCGGGGCCACACCCGTGCAGAC 2264 ||||||||||||||| ||||| || || || ||||||||||| |||||||| ||||| || Sbjct 4536 GTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCAAAC 4477 Query 2265 CTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCATTTCTTTCCGGAGCG 2324 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 4476 CTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGAGCG 4417 Query 2325 GGGTTTGGCTATCACGTTGTGAACTTCTGAAGCTGTGATGACCCCGAGCCGTAATTTTTG 2384 ||| || |||||||||||||||||||||||||| |||||||| |||||||||||||| || Sbjct 4416 GGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTTGTG 4357 Query 2385 CCATGCATAATCTCCCTGCTCGACACCTCTCACGTCGATCCCGGTACGTTGTAGGATAAT 2444 |||||||| ||| ||||| |||||| |||||||||||||||||||||| || |||||||| Sbjct 4356 CCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCGGTACGCTGCAGGATAAT 4297 Query 2445 TTCTGGTGTCATGCTGCCACCTTCTGCTCCGTGGCTTTCTGTTTCAGGAATCCAAGAACC 2504 || ||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 4296 GTCCGGTGTCATGCTGCCACCTTCTGCTCAGTGGCTTTCTGTTTCAGGAATCCAAGAGCT 4237 Query 2505 TTCTCTGCTTCGGCCTGGGACAGTTCTGACGACGCCCGAATGTAGCGGCGAAATATCTGA 2564 ||| ||||||||||||| | |||||||||||| || ||||||| ||||||||||||||| Sbjct 4236 TTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCGGCGAAATATCTGG 4177 Query 2565 GAACAGAGCGGCAAGAGGTCGTCATCCCACGTTTTTTCCATGGAAGTAAGAAGGGCGTTA 2624 |||||||||||||| | |||||||||||| ||||| |||| || | || || | |||| Sbjct 4176 GAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAGCAGAGTGTTA 4117 Query 2625 ATTTCCGACATGGTCTCTTCGTTAACCGGGGTGATGTCGCGTTCCGGCTGACGTTCTGTA 2684 || ||| |||||| || ||||||||||| |||||||||||||||||||||||||||| | Sbjct 4116 ATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGGCTGACGTTCTGCA 4057 Query 2685 GTATATGCGGTATTTTCGACAATGCGTTCGGCTTCATCCTTGTCATAGATACCAGCAAAT 2744 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 4056 GTGTATGCGGTATTTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAAT 3997 Query 2745 CCGAAGGCCAGACGGGCACACTGAATCATCGCTTTATGCCGTAACATCCGTTTGGGATGC 2804 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 3996 CCGAAGGCCAGACGGGCACACTGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGC 3937 Query 2805 GACTGCCACGGCCCCGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTGCGCGGCGACAT 2864 ||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 3936 GACTGCCACGGTCCGGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCAT 3877 Query 2865 TCATCCATCCACTCGGTAACGCAGATCGGGTGATTACGGTCTTTGCGGTAAATCCGACAT 2924 ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||| Sbjct 3876 TCATCCATCCACTCGGTAACGCAGATCGGATGATTGCGGTCCTTGCGGTAAATCCGGCAT 3817 Query 2925 GTACAGGATTCATCGTCCTGCTCAAAGTCCATGCCATCAAACTGCTGGTTTTCGTTGATA 2984 || |||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 3816 GTGCAGGATTCATTGTCCTGCTCAAAGTCCATACCATCAAACTGCTGGTTTTCATTGATG 3757 Query 2985 ATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAG 3044 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3756 ATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAG 3697 Query 3045 GCGTAAATTTCTTTCGTCCATGGATTAAGGCCGTACTGGTTGGCAACGATCAGCAATGCG 3104 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 3696 GCGTAAATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAGCAATGCG 3637 Query 3105 ATGAACTGCGCATCGCTGGCATCACCTTTAAATGCAGTCTGGCGAAGAGTGGTGATCAGT 3164 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 3636 ATGAACTGCGCATCGCTGGCATCGCCTTTAAATGCCGTCTGGCGAAGAGTGGTGATCAGT 3577 Query 3165 TCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCTGCCAGCGTTGCG 3224 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3576 TCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCAGCCAGCGTTGCG 3517 Query 3225 AGAGCTGTACTCATCTGGTTTATACCTCTGAATCAATATAAATCTGGTGGCGGGCAATGG 3284 || |||||||||||| | ||||||||||||||||||||| || ||| ||| | ||||||| Sbjct 3516 AGTGCTGTACTCATCCGTTTTATACCTCTGAATCAATATCAACCTGATGGTGAGCAATGG 3457 Query 3285 TTTCAACCATGTACCGGATGTGTTCTGCCATGCGTTCCTGAAAATCGACATCGTCATCAA 3344 |||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||| Sbjct 3456 TTTCAACCATGTACCGGATGTGTTCTGCCATGCGCTCCTGAAACTCAACATCGTCATCAA 3397 Query 3345 ATGCACGGGCAATGGCTTTTTTGCTGGCTCCATGACGTTGCAGATTATCGATGCACAGCG 3404 ||||||||| |||||||||||||||||| || ||||| | || ||||||||| |||| Sbjct 3396 ATGCACGGGTAATGGCTTTTTTGCTGGCCCCGCAGCGTTGTAAATGATCGATGCAGAGCG 3337 Query 3405 ATTCAAACAGGTGCTGGGGCAGACCTTTTTCCAGGTCGTCCGCCAGTTCAGTCTCATTTT 3464 ||||||||| ||||||||||| ||||| |||| |||||| |||||||| | ||| || | Sbjct 3336 ATTCAAACAAATGCTGGGGCAGGCCTTTGTCCATGTCGTCTGCCAGTTCTGCCTCTTTCT 3277 Query 3465 CTTCACGGGCAATTTGCCGGTAGTGTCGTGCCCATGACTGCTCTTCAATGCGATC 3519 |||||||||| || ||| ||||||| || ||||| ||| | |||| ||||| Sbjct 3276 CTTCACGGGCGATCTGCTGGTAGTGACGCGCCCAGCTCTGAGCCTCAAGACGATC 3222 Score = 544 bits (602), Expect = 3e-150 Identities = 330/349 (95%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 1778 ATCGCCATTGCTCCCCAAATACAAAACTAATTTCAGCCAGTGCTTCGTCCATTTTTTCGA 1837 ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 4934 ATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGA 4875 Query 1838 TGAACTCCGGCACCATCTCGTCAAAACCAGCCATGTATTTTTCATCCCGCTCGACCACGA 1897 ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 4874 TGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGA 4815 Query 1898 CATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCGAAGTACCAGGCATCTT 1957 ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| Sbjct 4814 CATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTT 4755 Query 1958 TTCGAGTCACCCACATGCTGAATTGCACCTGGGCCATGTAAGCTGATTTTATGGCCTCGA 2017 |||| ||||||||||||||| | |||||||||||||||||||| || ||||||||||||| Sbjct 4754 TTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGA 4695 Query 2018 AACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGACATTTCAGCTCAAGGC 2077 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 4694 AACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGC 4635 Query 2078 CGTTGCCGTCACTGCATAATCCATCCGGAGAGCAGGCGGTACGCATACT 2126 ||||||||||||||||||| ||||| |||||||||||||| |||||||| Sbjct 4634 CGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACT 4586 >seq10411 Length=590 Score = 197 bits (218), Expect = 5e-46 Identities = 166/202 (82%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 27659 CTGCCCAATTCCAGAAACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGT 27718 ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2 CTGTCCAATTCCCGAAACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGTTACTGCTGT 61 Query 27719 CTGTTTGTTTTGAACAGTAAACGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGC 27778 | |||||||| |||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 62 CGGTTTGTTTCCAACAGTAAACGTCTGTTGAGCACATCCTGTAATAAGCATTGCCAGAGC 121 Query 27779 AGTAGCGAGTAGCAtttttttCATGGTGTTATTCCCGATGC-TTTTTGAAGTTCGCAGAA 27837 | || | | |||||||||||| | |||| | ||| || || || |||||| Sbjct 122 GGCAGAAAACAACATTTTTTTCATCTTATTATCC----TGCATTGTTAAAAACGGCAGAA 177 Query 27838 TCGTATGTGTAGAAAATTAAAC 27859 || |||||| | |||||||| Sbjct 178 TCCTATGTGACAACAATTAAAC 199 Score = 140 bits (154), Expect = 1e-28 Identities = 144/182 (79%), Gaps = 5/182 (3%) Strand=Plus/Plus Query 27915 AGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCTGACGGGGAAC 27974 || |||| || |||||| ||||||||| |||||| ||| || |||| ||||||||| Sbjct 328 AGCTGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCGACGGGGAAT 387 Query 27975 TTCT-CTGCGGGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTTT 28033 | || ||||| ||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 388 TCCTTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTGC 446 Query 28034 TCACGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAACC 28093 | || ||| | || | || ||| | || ||| | ||||||||| |||||||||||||| Sbjct 447 TGAC-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAACC 503 Query 28094 GG 28095 || Sbjct 504 GG 505 >seq2342 Length=4104 Score = 192 bits (212), Expect = 2e-44 Identities = 115/121 (95%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 1778 ATCGCCATTGCTCCCCAAATACAAAACTAATTTCAGCCAGTGCTTCGTCCATTTTTTCGA 1837 ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 3984 ATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGA 4043 Query 1838 TGAACTCCGGCACCATCTCGTCAAAACCAGCCATGTATTTTTCATCCCGCTCGACCACGA 1897 ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 4044 TGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGA 4103 Query 1898 C 1898 | Sbjct 4104 C 4104 Score = 145 bits (160), Expect = 3e-30 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 58991 GCTCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAA 59050 ||||||||| |||||||||||| ||||||| || | ||| |||||||||||||| ||| Sbjct 3025 GCTCACTTCGAACCTCTCTGTTTACTGATAAGCTCCAGATCTTGCTGGCAACTGGCACAA 3084 Query 59051 GTTCGGCATCCGCGAACAGCCTGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAA 59110 || || || || |||| ||| | |||| || ||||||||||||||||||||||| ||| Sbjct 3085 GTCCGACAACCCTGAACGGCCAGTCGTCTTCGTTCATCTATCGGATCGCCACACTCACAA 3144 Query 59111 CAATGAGTAGCAGAT 59125 |||||||| |||||| Sbjct 3145 CAATGAGTGGCAGAT 3159 >seq3951 Length=514 Score = 100 bits (110), Expect = 1e-16 Identities = 84/102 (82%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 27076 GGGCTG--AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAG 27133 |||||| ||||||||||| ||||||||||| |||||||||| |||||||| ||||| | Sbjct 413 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 472 Query 27134 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGC 27175 ||| || ||| ||||||| || || | |||||||| |||| Sbjct 473 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGC 514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194647463412108