Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq60 185 2e-41 seq444 179 9e-40 seq1158 176 1e-38 seq974 138 3e-27 seq548 89.7 1e-12 >seq60 Length=27343 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| || || ||||| ||||||||||| || |||| |||||| Sbjct 11520 ACGAAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCCGAAAGGGT 11579 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || ||||| || ||||||||||| ||||||||||| || || | || Sbjct 11580 GCGACCATCCTCAAGTTGCTTACCGGCGAAGATAAGACGTTGTTGGTCGGGGGGGATACC 11639 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| |||||||| || ||||| |||||||||||||||| || |||||||| Sbjct 11640 CTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCGACCTCGAG 11699 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || | ||||| || || | |||||| Sbjct 11700 TGTGATGGTCTTTCCTGTCAATGTCTTAACGAAGATCTGCAT 11741 >seq444 Length=38654 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || ||||||||||| ||||||||||| || || | ||| || | ||||| Sbjct 5256 AGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCC 5197 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || |||||||||||||| || | ||||||||||| Sbjct 5196 TCGAGCTGCTTACCAGCGAAGATGAGACGTTGTTGGTCAGGTGGGATACCTTCCTTGTCT 5137 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||||| | || ||||| |||||||| ||| Sbjct 5136 TGGATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATGGTC 5077 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | ||||| Sbjct 5076 TTACCAGTGAGGGTCTTAACGAAGATTTGCAT 5045 Score = 167 bits (184), Expect = 5e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | ||||||||||||||| ||||||||||| || || | ||| Sbjct 5725 TCCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAG 5666 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || || ||||| || || ||||| || |||||||||||||| || | Sbjct 5665 GGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGAT 5606 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || |||||||| || ||||| || || || || ||||||||||| | || ||||| Sbjct 5605 ACCCTCCTTGTCTTGAATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGACCTC 5546 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| ||||| || || | ||||| || || | ||||| Sbjct 5545 GAGAGTGATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 5501 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||||||||| ||||||||||| ||||| | || || | ||||| Sbjct 5028 AGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCC 4969 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| || ||||| || |||||||||||||| |||| ||| |||||||| Sbjct 4968 TCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGAATTCCCTCCTTGTCT 4909 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| || || || | || ||||| | || || ||| Sbjct 4908 TGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCCTCGACCTCCAAGGTAATAGTC 4849 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || ||||| || ||||| | |||||| Sbjct 4848 TTGCCTGTCAGAGTTTTAACAAAGATTTGCATT 4816 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| ||||||||||| ||||| | || || | ||||| Sbjct 5484 AGAACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCC 5425 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| || ||||| || |||||||||||||| || | || |||||||| Sbjct 5424 TCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCT 5365 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| || || || | ||| ||||| || ||||| ||| Sbjct 5364 TGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCTTCGACCTCAAGGGTGATGGTC 5305 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | ||||| Sbjct 5304 TTACCAGTGAGGGTCTTGACGAAGATTTGCAT 5273 >seq1158 Length=25781 Score = 176 bits (194), Expect = 1e-38 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| || || || |||||||| ||||| || || || || | || Sbjct 9483 TCCACGGAGACGAAGGACGAGATGGAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAG 9542 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || |||||||| || |||||||| | |||||||||||||| |||| Sbjct 9543 AGTACGACCATCCTCGAGCTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGAAT 9602 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || |||||||| || ||||| || ||||| |||||||||||||| | |||||||| Sbjct 9603 ACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTCTCGATGGTGTCAGAACCCTCAACCTC 9662 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| ||||| || ||||| ||||| ||||| | ||||| Sbjct 9663 GAGAGTGATGGTCTTACCGGTGAGGGTCTTAACAAAAATTTGCAT 9707 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| ||||||||||| || || | |||||| | ||||| Sbjct 9724 AGAACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGACCATCC 9783 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || ||||| || |||||||||||||| || | || ||||| || Sbjct 9784 TCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTATCT 9843 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||| || || | |||||||| | ||||| ||| Sbjct 9844 TGGATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTCCAAGGTGATGGTC 9903 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||||||||| | ||||| || Sbjct 9904 TTGCCAGTCAGTGTCTTTACAAAGATTTGCATGTT 9938 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || || ||||||||||| ||||||||||| || || | |||||| Sbjct 9030 ACGAAGACGGAGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGT 9089 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || || ||||| || || ||||| || |||||||| || || || | || Sbjct 9090 ACGACCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGTGGGATACC 9149 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| || ||||| || ||||| |||||||| ||||| | |||||||| || Sbjct 9150 CTCCTTGTCTTGAATCTTGGTCTTGACGTTCTCGATGGTATCAGAACCCTCAACCTCAAG 9209 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | ||||| ||||| | ||||| Sbjct 9210 GGTGATGGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 9251 >seq974 Length=18895 Score = 138 bits (152), Expect = 3e-27 Identities = 144/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| ||||| || |||||||| || || | ||||| | || || Sbjct 4852 AGGACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGACCGTCC 4911 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| | |||||||| || || || | ||| |||||||| Sbjct 4912 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCGGGGGGGATTCCCTCCTTGTCT 4971 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| |||| || ||||| || || || ||| Sbjct 4972 TGGATCTTGGCCTTGACATTCTCGATGGTGTCTGAGCCCTCGACCTCAAGGGTAATGGTC 5031 Query 211083 TTTCCCGTG 211091 || || ||| Sbjct 5032 TTACCTGTG 5040 >seq548 Length=23391 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869 || ||||||||||| |||||||| ||||||||||| ||||||| | ||||| || Sbjct 840 CCCAAGAAGCACGGTAGAGGAGGTCAATCTGCTCTTCGTTTTGCCCGTCTTCGTCTCGAG 899 Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAAGAC 139929 ||| | ||||||||| | | || || | ||| || | || | ||||||| | || Sbjct 900 AAGCGTCACAACTACGTTCGCAAGGTCTCTGAGTTGGCCACCCAATTCTTTATCACAAAC 959 Query 139930 AACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAG 139986 |||||| ||| |||||| | || | |||||| || || ||||||||| || Sbjct 960 GACAAGTCCAATGTGTCTGGTTTGATTCTTGCAGGTAGTGCCGATTTCAAGACAGAG 1016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158953255420430