Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq444 98.7 9e-16 seq1158 87.8 2e-12 >seq444 Length=38654 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| ||| ||||| || || ||||||| || || || | || ||| Sbjct 5025 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCCTCA 4966 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 || || ||||| ||||| || ||||| || ||||| | || | | ||| ||||| | Sbjct 4965 AGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGAATTCCCTCCTTGTCTTGG 4906 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| || | | |||||| ||| || |||| || ||| | || Sbjct 4905 ATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCCTCGACCTCCAAGGTAATAGTCTTG 4846 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| |||||||||||||||||||| Sbjct 4845 CCTGTCAGAGTTTTAACAAAGATTTGCAT 4817 >seq1158 Length=25781 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| ||| ||||| || || || |||| ||| || || | || ||| Sbjct 9727 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCA 9786 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 || || || || ||||| || ||||| || ||||| |||||| | | ||| || || Sbjct 9787 AGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGG-ATACCCTCCTTATCTTG 9845 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| || | | |||||| ||| || |||| ||||| | || Sbjct 9846 GATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTCCAAGGTGATGGTCTT 9905 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || ||||| || || |||||||||||||| |||| Sbjct 9906 GCCAGTCAGTGTCTTTACAAAGATTTGCATGTTTA 9940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429475544065766