Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq444 95.1 8e-15 seq1158 93.3 3e-14 >seq444 Length=38654 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || || || ||||| || || || || | Sbjct 5273 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAAGGTTCC 5332 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || || | || || || | | ||||| || ||| | || || || || Sbjct 5333 GATACTATCGAGAACGTCAAGACCAAGA-TCCAAGACAAGGAGGGTATCCCACCTGACCA 5391 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||||||||| ||||| || || | || ||| | ||||||||| Sbjct 5392 ACAACGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCGATTACAA 5451 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| |||||||| | ||| | ||| Sbjct 5452 CATCCAAAAGGAGTCCACCCTCCATCTCGTT 5482 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||| | || || || || ||||||||||| || || | Sbjct 5501 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAGGTCGAGGGTTCT 5560 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || || || ||| ||||| || ||| | || || || || Sbjct 5561 GACACCATTGAGAATGTCAAGAC-CAAGATTCAAGACAAGGAGGGTATCCCACCTGACCA 5619 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| || || ||||| || || | || || | || ||||| Sbjct 5620 ACAACGTCTCATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACCCTTTCTGACTACAA 5679 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| |||||||| | || || ||| Sbjct 5680 CATCCAAAAGGAGTCCACTCTTCACTTGGTT 5710 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 23594 ACAATTAATTACTTAA-AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACT 23652 |||| |||||| || |||||| || || |||||||| || || || || || || || Sbjct 4799 ACAAATAATTAAACAACAATGCAAATCTTTGTTAAAACTCTGACAGGCAAGACTATTACC 4858 Query 23653 CTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGA 23711 | || || || | || ||| | || || | || || || | | ||||| || Sbjct 4859 TTGGAGGTCGAGGGTTCCGATACTATCGAGAACGTCAAGACCAAGA-TCCAAGACAAGGA 4917 Query 23712 AGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG 23771 || | || || || ||||| ||| | || ||||||||||| ||||| || || | || Sbjct 4918 GGGAATTCCACCTGACCAACAACGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGTCG 4977 Query 23772 CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| | |||||||||||| ||||| |||||||| | || || ||| Sbjct 4978 TACTCTCTCCGATTACAACATCCAAAAGGAGTCCACTCTTCACTTGGTT 5026 >seq1158 Length=25781 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| ||||| |||||||| || || || ||||||||||| ||||| | Sbjct 9707 ATGCAAATTTTTGTTAAGACCCTCACCGGTAAGACCATCACTCTCGAGGTTGAGGGTTCT 9648 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || | || || || ||| ||||| || ||| | || || || || Sbjct 9647 GACACCATCGAGAACGTCAAGAC-CAAGATTCAAGACAAGGAGGGTATTCCACCTGACCA 9589 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || || || || || || || || || | || ||| | ||| ||||| Sbjct 9588 ACAACGTTTGATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGTACTCTCTCCGACTACAA 9529 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| |||||||| Sbjct 9528 TATTCAAAAGGAGTCCAC 9511 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || || || | || || || | Sbjct 9479 ATGCAGATTTTCGTCAAGACCCTCACTGGTAAGACAATTACCTTGGAGGTCGAGGGTTCC 9420 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || || | || || || | || || || || ||| | || || ||||| Sbjct 9419 GATACCATCGAGAACGTCAAGACCAAGA-TTCAAGATAAGGAGGGTATCCCACCCGATCA 9361 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || || |||||||| ||||| || || | |||||| | ||||||||| Sbjct 9360 ACAACGTCTCATCTTCGCCGGCAAGCAACTCGAGGATGGTCGCACTCTCTCCGATTACAA 9301 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 9300 CATTCAAAAGGAGTCAAC 9283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337954472958056