Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1087 114 1e-20 seq5294 96.9 3e-15 seq5955 82.4 6e-11 >seq1087 Length=202632 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728 |||| || ||||| ||||| ||||| || || || ||||| | || || ||||| || Sbjct 83332 TAGAGATGCGCATCGCCCAGCGTGTGAACGAAATCACCCGGCTGCAGACCCGTGACCTGC 83391 Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788 |||| |||| || || || | ||| ||||| || || ||||| ||||| || Sbjct 83392 GCCACCATGAGGGTCAGCAGGGCATAGGATGCGATATTGAACGGCACGCCGAGAAAGATA 83451 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 29848 || | || | ||||||||||||||| || |||| ||||||| |||||| ||||| || Sbjct 83452 TCGGCGGAGCGCTGGTAGAGCTGGCAGGAAAGCTTTCCGTCGGCCACGTAGAACTGGAAC 83511 Query 29849 ATGGCA-TGGCACGGAGGAAGGGCCAT 29874 | |||| ||||| || || || ||||| Sbjct 83512 A-GGCAGTGGCAGGGCGGCAGCGCCAT 83537 >seq5294 Length=478 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 29654 TCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29713 || ||||||| ||| | || || || |||||||| || || || || ||| | Sbjct 415 TCAACGTGGTTGGAGTACAGATGCGCGTCGCCCAGGGTATGCACGAAGTCGCCCACGCCC 356 Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 ||||||||| | || |||| ||||| ||||| || | ||||||||||||||| || ||| Sbjct 355 AGCCCGGTGGCCTGCGCCACCATGTGGGTGAGCAGTGCGTAGCTGGCGATGTTGAACGGC 296 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||| || | |||||| | |||||| ||||| ||||| | Sbjct 295 ACGCCCAGGAAGATGTCGCCGCTGCGCTGGTACAACTGGCAGCTGAGCTTGCCGTCCACC 236 Query 29834 ACGTAAAACTG 29844 ||||| ||||| Sbjct 235 ACGTAGAACTG 225 >seq5955 Length=632 Score = 82.4 bits (90), Expect = 6e-11 Identities = 117/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 29752 GTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTC--CCCTGACCTCTGGTAGAGC 29809 |||| ||||||||| || ||||| ||||| |||||| | ||| | ||| || ||| Sbjct 282 GTAGGAGGCGATGTTGAACGGCACACCGAGGAACATGTCGGCGCTG--CGCTGATACAGC 339 Query 29810 TGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGG 29869 || |||||||||| |||||| ||||| ||||| ||| || || || || | || Sbjct 340 TGACACGAGAGCTTGCCGTCGGCGACGTAGAACTGGAACAGCGCGTGACAGGGCGCGAGC 399 Query 29870 GCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGA 29912 |||||| | ||| |||||||||||| ||||||||| Sbjct 400 GCCATGTCCGGGATGTCGGCCGGGTTCCAGGCAGACACGATGA 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406096957574452