Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq232 215 4e-51 seq2491 129 5e-25 seq915 116 3e-21 seq2141 84.2 2e-11 >seq232 Length=384298 Score = 215 bits (238), Expect = 4e-51 Identities = 578/872 (66%), Gaps = 20/872 (2%) Strand=Plus/Minus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 ||||| | ||||| || || | || || ||||| |||||||||||||| || | | Sbjct 339499 ACACCTGACTTTTGATACTCTGCAACACGTTTTTCAAAGAAATTAGTTTTTCCCTGAAGT 339440 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 ||||| | ||||| ||||| || ||||| | || |||| ||||| | Sbjct 339439 GAAATCATATCCATGAAATCGAATGGATTTGCTGATCCGTAAACACGCTCACAGCCCAAT 339380 Query 4368 GCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATT 4427 |||| | |||| || || || || |||| |||||| |||| || | ||| || Sbjct 339379 TCTACTAATAATCTATCGGCAACGAACTCTAAATACTGTGTCATAAGACCAGCGTTCATA 339320 Query 4428 CCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCT 4487 |||||||| || || || || | | ||| | ||| | | ||| ||| || || || Sbjct 339319 CCAATTAAACTTACCGGAAGAGATTCTGTGATAAATTGTCTTTCGATATCTAAAGCATCG 339260 Query 4488 GTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAA---CAA- 4543 || || ||||| ||| ||||||| | ||| ||||| || | | || Sbjct 339259 ACAATAATTTCTTTAATTCTATCTTTTGGCACTTTGTTTACCAAATGGTGATTGTGCAGG 339200 Query 4544 TAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGT 4603 | ||| ||||||||||||||| | ||||||||| | ||||| ||| ||||| || || Sbjct 339199 TGAAC-CGCAAAATCACAATGTACACCTTCGTCACGAGAAATCAATTCATTAGAGAATGT 339141 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 ||| || ||||||||||| | ||||| | |||| | || | || | || || || Sbjct 339140 TAAACCTGGCATTAAACCACGTTTTTTCAACCAATAAATTGAACAGAAAGCTCCCGAGAA 339081 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723 || || ||||| || || ||||| || | || || | || || | || | Sbjct 339080 AAAGATTCCTTCAACTGCAGCAAAAGCAATTAGTCTTTCAGCAAATGAATCAGATTCG-- 339023 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAAC-GCACGGAATTGTGTATATAG 4782 ||||||||||| ||||| | ||||||||||||| ||| | || | | || || Sbjct 339022 ----ATCCATTTTAAAGCCCATTCTGCTTTTTTCTTAATTGCAGGAAAAACT-TCTAAAG 338968 Query 4783 CGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 | ||||| || | |||||| | ||||| | ||| || || |||| || || Sbjct 338967 CATTAAACAACTCTGATTTTTCTGCTTCGTCTTTTACATACGTATCAATTAATAAAGAAT 338908 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTG 4902 | | ||| || ||||| || || ||||| || || |||||| | | ||||| | Sbjct 338907 AAGTCTCACTGTGAATATTCTCCATCATGATCTGGAAACCATAAAAGAACTTTGCTTCGG 338848 Query 4903 TTACTTGAACTTCGTTA-CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 |||||| |||||| |||||| | || | | ||||||||||| || ||||| Sbjct 338847 CGTATTGAACCTCGTTAACAAAAT-TCTCAGCCAGATTTTCGTTTACGATTCCGTCTGAA 338789 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTT 5018 || |||||||| || |||| ||| || || || ||||||| |||||| || Sbjct 338788 GCAGCAAAAAATGCTAAAATATGTTTAATGAAATAACGTTCGTCGTCATTAAGTTTATTA 338729 Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCA-AAACGACGCTTC 5077 ||||| | | ||||| | | |||||| | |||||| ||||||| |||| | ||||| Sbjct 338728 TTCCAATCTGTTAAATCCTGATGTAAATCGATTTCTTCGGCAGTCCAGAAACTA-GCTTC 338670 Query 5078 CGCTTTTTTGTACATAGACCAAATATCAGGAT 5109 | |||||| ||| |||||||||| ||| Sbjct 338669 CATTTTTTTATACCATTCCCAAATATCATGAT 338638 >seq2491 Length=10632 Score = 129 bits (142), Expect = 5e-25 Identities = 557/871 (64%), Gaps = 20/871 (2%) Strand=Plus/Minus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 |||||| || || || || || || |||||||| |||||||||| | || || | Sbjct 4864 TTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCAT 4805 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTT--TTTCACACTTTAGAGCTAC 4372 |||||||||||||||||||| || || | || || || | | || | | || | Sbjct 4804 CTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTC--CTGC 4747 Query 4373 AAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTC-GCAGTTAATTCCAA 4431 | || ||| ||| || ||||| || |||||||| ||| |||| ||| || || || | Sbjct 4746 A-GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCA-TTCATCCCGA 4689 Query 4432 TTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGA 4491 | | || || | || | ||| | ||| || | ||| || ||| || || || Sbjct 4688 TCAGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGA 4629 Query 4492 TTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAA-CAC 4550 | || | | | || | |||||||| | || || | || | || Sbjct 4628 TAATTCCATGAACGACTTCCTGGCTCAGTTTATTTT-TGAGCATTTTATAAAGCAGGCAG 4570 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 ||||| |||||||||| || || |||||| ||||| || ||| ||| |||| || Sbjct 4569 GCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCT 4510 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||| | ||||| ||||| | ||| || || | || ||| ||||| ||| Sbjct 4509 GGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAAAATG 4450 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT--GTCTTTAA 4728 ||||| || ||||| || || || || || | || ||| | | | || Sbjct 4449 CCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAA--------TTTCCGCCCTCAA 4398 Query 4729 TCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA 4788 |||| |||||||| | ||||||||||| || || |||| || | || || | | Sbjct 4397 TCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGA 4338 Query 4789 ATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTT 4848 | | | |||||| || |||| |||||| || || || || || ||| ||| Sbjct 4337 ACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTT 4278 Query 4849 CAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTT 4908 |||| || || ||||| || ||||| || || ||||| || | ||||| | | | Sbjct 4277 CAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCT 4218 Query 4909 GAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAA 4968 | |||||| | || | || | | |||||| ||||| || |||||||| || |||| Sbjct 4217 GTACTTCGCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAA 4158 Query 4969 AAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGG 5028 |||| || | | |||||| || || | | ||| | | || | || | |||||| Sbjct 4157 AAAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCT 4098 Query 5029 GCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGT 5088 | || | || | |||| ||||||| | ||||| || ||||| || || | Sbjct 4097 TCTGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTAT 4038 Query 5089 ACATAGACCAAATATCAGGATACTGAATCGG 5119 |||| ||| || ||||| || | ||| || Sbjct 4037 ACATTTCCCAGATTTCAGGGTATTTAATAGG 4007 >seq915 Length=13476 Score = 116 bits (128), Expect = 3e-21 Identities = 203/290 (70%), Gaps = 9/290 (3%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| ||||| ||||| || | ||| ||||| | || || || |||||||| || || Sbjct 289 AAACAGGCAAAGTCACAGTGAAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTC 230 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATAT--AGCGGCAAATGACCCAGAAA 4662 ||||||||||| || || | ||| || |||||||| || ||| | | | | | |||| Sbjct 229 AATCCGGGCATCAAGCCACGCTTCTTGAGCCAAAAGATGGAGCAGAAGCTACCACTGAAA 170 Query 4663 AGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGT 4722 || || || ||||| || ||||| || || || || | || || ||| ||| Sbjct 169 --AAGATACCCTCTACAGCTGCAAAGGCGACCAAACGCTCAGCAAATGACTTGGAGTTG- 113 Query 4723 CTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAG 4782 |||||||| | | ||||| | ||| || ||||| || || ||||| || | || | Sbjct 112 --GTAATCCATCTCATAGCCCACTCAGCCTTCTTCTTTACACATGGAATGGTCTCGATGG 55 Query 4783 CGTTAAATAATTTACT-TTTTTCAAATGGGTCTTGAATATAAGTGTCTAT 4831 | |||||||| || | |||||| | | |||| ||||||||| || || Sbjct 54 CATTAAATAAATTCTTCTTTTTCTCAGGATTCTT-AATATAAGTATCAAT 6 >seq2141 Length=1138 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898 ||||| | || ||||| |||||||| || ||||| || || || || || ||||||||| Sbjct 71 CTATAAGTCTCTGAATGAATATTTTCAATGGCAATTTGGAAACCATAGAAACATCTAGCT 130 Query 4899 TCTGTTACTTGAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTC 4957 || | | ||| || || | ||| ||||| | ||||| || || || ||||| || Sbjct 131 TCAGGGATTTGGACCTC-TGACATGAATCTGGTGGCCAAGTTCTCATTGACGATACCATC 189 Query 4958 ACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGT 4995 |||||| ||||| || ||||| || | | ||||||| Sbjct 190 ACTGGCAGCAAAGAAAGCCAAGACGTTTGTAATAAAGT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426979951146206