Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1087 87.8 1e-12 seq5294 82.4 6e-11 >seq1087 Length=202632 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27163 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 27222 |||| || || || ||||| ||||| || || || ||||| | || || ||||| || Sbjct 83332 TAGAGATGCGCATCGCCCAGCGTGTGAACGAAATCACCCGGCTGCAGACCCGTGACCTGC 83391 Query 27223 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 27282 |||| |||| || || || | ||| ||||| || || || || ||||| || Sbjct 83392 GCCACCATGAGGGTCAGCAGGGCATAGGATGCGATATTGAACGGCACGCCGAGAAAGATA 83451 Query 27283 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACAT 27342 || | || | |||||||||||| || || |||| ||| ||| ||||| ||||| | Sbjct 83452 TCGGCGGAGCGCTGGTAGAGCTGGCAGGAAAGCTTTCCGTCGGCCACGTAGAACTGGAAC 83511 Query 27343 ATGGCGTGGCACGGAGGAAGAGCCAT 27368 | | |||||| || || || ||||| Sbjct 83512 AGGCAGTGGCAGGGCGGCAGCGCCAT 83537 >seq5294 Length=478 Score = 82.4 bits (90), Expect = 6e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 27169 TGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 27228 || ||||| |||||||| || || || || ||| | ||||||||| | || |||| | Sbjct 394 TGCGCGTCGCCCAGGGTATGCACGAAGTCGCCCACGCCCAGCCCGGTGGCCTGCGCCACC 335 Query 27229 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCC 27288 |||| ||||| || | ||||||||||||||| || || || || || ||||| || Sbjct 334 ATGTGGGTGAGCAGTGCGTAGCTGGCGATGTTGAACGGCACGCCCAGGAAGATGTCGCCG 275 Query 27289 GACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTG 27338 | |||||| | ||| || ||||| || || ||||| ||||| Sbjct 274 CTGCGCTGGTACAACTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTG 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369446935916042