Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq11800 131 5e-26 seq10729 113 1e-20 seq287 91.5 5e-14 seq11475 87.8 6e-13 >seq11800 Length=371 Score = 131 bits (144), Expect = 5e-26 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 34054 TCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGC 34113 ||||| ||||| | ||||| ||||| ||| |||||||||||||| || ||||| ||||| Sbjct 21 TCGTCGCGGTAGATGAACACGATCATGTCCGCGTCCTGCTCGATAGCGCCGGATTCGCGA 80 Query 34114 AGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCGAC 34173 ||||| | ||||| ||| ||||||| | ||| ||||| |||||||||||||| ||| Sbjct 81 AGGTCGGCCATCACCGGGCGCTTGTCGGTACGCGTTTCCAGCGAGCGGTTGAGCTGGGAC 140 Query 34174 AGCACGATCACGGGGATACCAAGCTCCATGGCCAG 34208 ||| ||||||| || | || ||| ||||||| Sbjct 141 AGCGCGATCACCGGCACGTTGAGTTCCTTGGCCAG 175 >seq10729 Length=418 Score = 113 bits (124), Expect = 1e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 34042 GGGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCC 34101 ||||| || |||||||| ||||| |||||||| |||| ||| |||||||| || ||||| Sbjct 119 GGGTGGTACACCTCGTCCCGGTAGACGAACATAATCAGGTCCGCGTCCTGTTCAATCGCA 178 Query 34102 CCGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGG 34161 ||| || |||||||| | | ||||| ||||| || ||||| ||||||| ||| Sbjct 179 CCGCTATCACGCAGGTCTGCGTTGATCGGACGCTTATTTGGCCGTCGCTCCAGTTCTCGG 238 Query 34162 TTGAGCTGCGACAGCACGATCACGGGG 34188 |||||||| || ||| | | ||| ||| Sbjct 239 TTGAGCTGGGAAAGCGCAACCACCGGG 265 >seq287 Length=224423 Score = 91.5 bits (100), Expect = 5e-14 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 34054 TCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGC 34113 ||||| || || ||||| || | ||||||||||||||||||||||| |||||| || ||| Sbjct 67112 TCGTCGCGATAAACGAAGATCACCACGTCGGCGTCCTGCTCGATCGACCCGGATTCACGC 67053 Query 34114 AGGTCCGACATCATCGGTCGCTTGT-TCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCGA 34172 ||||| || | | ||| ||||||| | || ||| |||| ||| |||||| || Sbjct 67052 AGGTCGGAGAGCTGCGGGCGCTTGTCTTCGCGGCT-TTCCACCTGACGGGAGAGCTGTGA 66994 Query 34173 CAGCACGAT 34181 |||| |||| Sbjct 66993 CAGCGCGAT 66985 >seq11475 Length=475 Score = 87.8 bits (96), Expect = 6e-13 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 42757 ATGCTGATCCTGACCAGAAGACCCGGCGAAACCCTGCATATCGGCGACAACATCACCGTC 42816 ||| |||||||||| | | |||||||||||| ||||| ||| ||| ||| Sbjct 468 ATGTTGATCCTGACTCGCCGCGTAGGCGAAACCCTGATGATCGGTGACTCGGTCAGCGTG 409 Query 42817 ACGGTCCTTGGCAGCCAGGGCGACCAGGTGCGCCTCGGCATCACCGCCCCGGACGACGTC 42876 || || || ||| | ||||| |||||||||| |||| ||||| || ||| | ||||| Sbjct 408 ACCGTGCTCGGCGTCAAGGGCAACCAGGTGCGTATCGGTATCACTGCTCCGAAGGACGTG 349 Query 42877 GCCATCCACCGCTCCGAGATCTACCAGC 42904 ||| | |||||| ||||| ||||||| Sbjct 348 GCCGTGCACCGCGAAGAGATTTACCAGC 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160438500465180