Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq4593 361 3e-95 seq4225 98.7 6e-16 seq10595 87.8 1e-12 seq10706 84.2 1e-11 >seq4593 Length=590 Score = 361 bits (400), Expect = 3e-95 Identities = 360/464 (78%), Gaps = 2/464 (0%) Strand=Plus/Plus Query 78697 CTACCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGAACACCGCGGACGTGATCCG 78756 |||||||||||| || ||||| || |||||||||||||| || ||| ||||||| Sbjct 1 CTACCTGCCGATCTATTGGTCCTCGAAGGCGAAGCTGACGAACACGGCCGACCTGATCCG 60 Query 78757 GTTGATTATCCGAGACGAAGCAGTTCATGGGTACTACATCGGATACAAGTACCAGCGAGG 78816 | || ||||| ||||| || || || |||||||||||||| ||||||| |||| || Sbjct 61 CCTCATCATCCGCGACGAGGCCGTGCACGGGTACTACATCGGCTACAAGTTCCAGAAGGG 120 Query 78817 CCTCGAGACCCAGGGGCCGGCGCGGCAGGCTGAGCTCAAGGAGTACACGTTCGATCTGCT 78876 |||||||| | || | || ||| | | |||||||||||| ||||||||| || | Sbjct 121 CCTCGAGAACGAGACCCAGGAGCGCCGCGATGAGCTCAAGGACTACACGTTCTCGCTCAT 180 Query 78877 CTCGGAGCTCTACGACAACGAGTGTG-ACTACACCGAGCAGCTCTATGACGACGTCGGAC 78935 | |||||||||||||||||| ||| | ||||| || | ||||| |||| ||||| | Sbjct 181 GTACGAGCTCTACGACAACGAG-GTGCAGTACACGCAGGACCTCTACGACGGTGTCGGTC 239 Query 78936 TCACCGAGGATGTCAAGAAGTTCCTGCGCTACAACGGCAACAAGGCGCTGATGAACCTCG 78995 | ||||| || || ||||||||||||| |||||||| ||||||||| || |||||||| | Sbjct 240 TGACCGAAGACGTGAAGAAGTTCCTGCACTACAACGCCAACAAGGCCCTCATGAACCTGG 299 Query 78996 GCTACGAAGCACTGTTCCCCAAGGAAGAGACCATGGCAGACCCGGCCATCATGTCCGCGC 79055 ||||||| || |||||||| | || | | ||||||| ||| |||| || | Sbjct 300 GCTACGAGGCGATGTTCCCCTCCAGCGTCACGAACGTGAACCCGGCGATCCTGTCGGCAC 359 Query 79056 TCTCACCAGGCGGCGACGAGAACCACGACTTCTTCTCCGGGTCGGGCTCGAGCTACGTCA 79115 |||| || || |||||||||||||||||||||||| ||||| |||||| ||||||| Sbjct 360 TCTCGCCGAACGCCGACGAGAACCACGACTTCTTCTCGGGGTCAGGCTCGTCGTACGTCA 419 Query 79116 TCGGCAAAGCTGAAGCCACGGCAGATGAGGACTGGGACTTCTGA 79159 ||||||| || || ||||||| ||| || ||||||||||||||| Sbjct 420 TCGGCAAGGCCGAGGCCACGGAAGACGACGACTGGGACTTCTGA 463 >seq4225 Length=585 Score = 98.7 bits (108), Expect = 6e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 45292 CGCTGCCGTTCATCCATCCGCACGTGGCGCTGATGCCGGATGCTCACAGCGGCAAGGGGT 45351 || |||||||| || ||| |||||| |||||||||| | ||| ||||| ||| Sbjct 232 CGGTGCCGTTCGTCGGCCCGTGGGTGGCGGTGATGCCGGACGTGCACGTAGGCAAAGGGG 173 Query 45352 CCGCGGTCGGCACTGTGATCCCGACCGTCGATGCGGTGATCCCCGCGGCGGTCGGCGTCG 45411 || | || ||| | |||||||| ||| || ||| | || || || ||||||||||| | Sbjct 172 CCACCGTGGGCTCGGTGATCCCTACCCGCGGCGCGATCATTCCGGCCGCGGTCGGCGTGG 113 Query 45412 ACATCGGCTGCGGCATG 45428 ||||||||||||||||| Sbjct 112 ACATCGGCTGCGGCATG 96 >seq10595 Length=412 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/134 (75%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 45813 ATCGAGCTCGCCAACCCCGACCTGGCCTACCTGGCGTCCGGGACCGAC--GAGTTCGGTG 45870 ||||| || || ||||||||||||| ||||||| || || | || |||||| Sbjct 291 ATCGACCTTCCCGACCCCGACCTGGCATACCTGG--TCGAGGGCACACCGGAGTTCACCC 234 Query 45871 CCTACATCCGCGAGCTCCGGTGGGCCCAGGCGTTCGCGCTCGAGAACCGCGCCGAGATGA 45930 ||||||||| ||||| |||||||||||| |||||||| |||||| | ||||||| Sbjct 233 GCTACATCCGGGAGCTGCGGTGGGCCCAGCACTTCGCGCTGCTGAACCGGGAGGAGATGA 174 Query 45931 TGGACCGCTTCCTC 45944 |||| ||| || || Sbjct 173 TGGATCGCGTCATC 160 >seq10706 Length=312 Score = 84.2 bits (92), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 69876 CAGCGGTCCTACGAGAAG---GATGGCCAGCCGCGCACCACCTTCGAGCTCGAGGTTGAG 69932 ||||| |||||| || | || ||| | | ||||||| | ||||||| ||||| || Sbjct 290 CAGCGCTCCTACCAGGACCGCGAGGGCAACCAGCGCACCGCGATCGAGCTGGAGGTCGAC 231 Query 69933 GAGATCGGCCCCGCACTCCGGTACGCCACCGCCCGGGTCACC 69974 |||||||||||| | ||||||||||| ||||| | ||||||| Sbjct 230 GAGATCGGCCCCTCGCTCCGGTACGCGACCGCGCAGGTCACC 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299272782704876