Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq1087 129 9e-25 seq5955 120 5e-22 seq892 89.7 8e-13 seq1270 86.0 1e-11 seq1364 84.2 3e-11 >seq1087 Length=202632 Score = 129 bits (142), Expect = 9e-25 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||||||||| || ||||| || ||| | ||||| ||||||||| || || ||| | Sbjct 83900 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 83841 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 | || || || |||| || || || | || ||| || ||||| ||||||||| Sbjct 83840 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 83781 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 ||||||||||||||||| || || |||||| || || || || ||||| || || ||| Sbjct 83780 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 83721 Query 202729 TGGGACGAATGGGC 202742 ||||| |||||||| Sbjct 83720 TGGGATGAATGGGC 83707 >seq5955 Length=632 Score = 120 bits (132), Expect = 5e-22 Identities = 186/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 203290 CTATCGTGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATC 203349 || ||||||||| ||||||||||||||||||| | ||| | || |||||||| |||||| Sbjct 350 CTCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAACATC 291 Query 203350 GCCTCGTATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCAACATGGTGGCCGAGGAG 203409 ||||| || || || ||||| |||| | || |||||||| | | | | ||| || Sbjct 290 GCCTCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGGTGGGCCTCGAGCCCGGAGAC 231 Query 203410 TTCGTCTGGACAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGTCTG 203469 ||||||||||| ||||| || || | || ||| || | || |||| || | Sbjct 230 TTCGTCTGGACGGGCGGAGACTGCCACGTCTACGACAATCACGTCGATCAGGTGCGGGAG 171 Query 203470 CAGTTAACTCGTGACCCGCACCCATTACCGCGTCTGAAATTCAAACGTAAGCCCGAGTCT 203529 ||| | | ||||| || |||| | ||| ||| ||| || |||||||| || Sbjct 170 CAGCTCAGCCGTGAGCCCTACCCCTACCCGACGCTGCGTTTCGCGCGGAAGCCCGAATCG 111 Query 203530 ATCTTCGACTACCAGTTCGAAGACTT 203555 || ||||||||| | || ||||| Sbjct 110 ATTCTCGACTACCGCTATGAGGACTT 85 >seq892 Length=133947 Score = 89.7 bits (98), Expect = 8e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||| Sbjct 95917 TGTAGCTCAGTTGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 95976 Query 2770 TCAGTCCTGCCA 2781 ||| || |||| Sbjct 95977 TCACTCGCGCCA 95988 >seq1270 Length=19972 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 2622 TAGGGAAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGGTTGTTGGAGGTTCGAG 2681 ||||| ||||| ||| ||||||||||| ||||||||||||||| || | |||||||| Sbjct 3680 TAGGGGAGTAGCTCAGTTGGTAGAGCGGCGGTCTCCAAAACCGTAGGTCGCAGGTTCGAA 3739 Query 2682 TCCTCTCTTCCCTGCCA 2698 |||| ||| |||||||| Sbjct 3740 TCCTGTCTCCCCTGCCA 3756 >seq1364 Length=121373 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 2711 GTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCGT 2770 |||| |||| ||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 46654 GTAGTTCAGCTGGTTAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCGT 46595 Query 2771 C 2771 | Sbjct 46594 C 46594 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 2711 GTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCGT 2770 |||| |||| ||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 48770 GTAGTTCAGCTGGTTAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCGT 48711 Query 2771 C 2771 | Sbjct 48710 C 48710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788188133772000