Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_031019.1 Length=41809 Score E Sequences producing significant alignments: (Bits) Value seq3951 114 3e-21 seq4011 111 4e-20 seq2342 111 4e-20 seq7676 86.0 2e-12 >seq3951 Length=514 Score = 114 bits (126), Expect = 3e-21 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 6700 TTATCTGCATCATCGTCTGTCTTTCGTGGGCTGTTAATCATTATCGTGATAACGCCATCA 6759 ||||||||||||||||||| || || ||||||||||||||||| |||||||||||||| | Sbjct 386 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTA 445 Query 6760 CCTACAAAGAGCAGCGCGATAAA 6782 ||||||||| |||||||| ||| Sbjct 446 CCTACAAAGCCCAGCGCGACAAA 468 >seq4011 Length=1784 Score = 111 bits (122), Expect = 4e-20 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 216 GGAGCATCGCGTGGCAGAACTCGACGATGGCTACACCCGGACTGCAAATACACTGCTGGA 275 ||||| ||||||||||| ||||||||||| || || || | ||||||| ||||||| Sbjct 1632 GGAGCGGCGCGTGGCAGATCTCGACGATGGTTATACGCGCATTGCAAATGAGTTGCTGGA 1573 Query 276 AGCTGTCATGCTTTCTGGGCTTACTCAACATCAGCTACTGATTGTTATGGCTGTGTGGCG 335 |||||| ||||| | || | || || || ||||| ||| | | ||||||| ||| Sbjct 1572 AGCTGTGATGCTGGCCGGATTAACACAGCACCAGCTTCTGGTCTTCCTGGCTGTCATGCG 1513 Query 336 CAAGACATACGGTTATAACaaaaaaaTAGATTGGATCGGAAATGAACAGTTCGCTGAACT 395 ||| ||||| || | ||| |||| | | |||||| | | || || || | | ||| | Sbjct 1512 CAAAACATATGGCTTTAATAAAAGACTGGATTGGGTGAGCAACGAGCAACTTTCCGAATT 1453 Query 396 CACTGGCATGGCGCCAACCAAATGTTCTACCGCCAAAAACG 436 || || || ||| | ||| |||||| | || |||| || Sbjct 1452 GACCGGGATATTGCCGAACAAGTGTTCTGCTGCAAAAAGCG 1412 >seq2342 Length=4104 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 32752 CAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 32811 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1788 CAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 1847 Query 32812 TTAC 32815 |||| Sbjct 1848 TTAC 1851 >seq7676 Length=607 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 30653 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 30704 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 49 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133645958778164