Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq5955 268 5e-67 seq1087 131 1e-25 seq5294 120 2e-22 >seq5955 Length=632 Score = 268 bits (296), Expect = 5e-67 Identities = 422/594 (71%), Gaps = 19/594 (3%) Strand=Plus/Minus Query 991 GCTCAACGACAACGGCGTCACCATCTGGGACGAGTGGGCCGACG---CCGGCGGAAACCT 1047 |||| ||| ||||| ||||| |||||||||||||||||||| | |||||| |||| Sbjct 612 GCTCCGCGAGAACGGGGTCACGATCTGGGACGAGTGGGCCGATGAATCCGGCG---ACCT 556 Query 1048 CGGTCCTGTCTACGGCGCGCAGTGGCGGCACTGGCATGTCGAGGACGGAGGATCGTCGTG 1107 ||| || |||||||| | ||||||||| |||| ||| | |||| | | | | Sbjct 555 CGGCCCGGTCTACGGGGTGCAGTGGCGTTCGTGGC----CGACGCCGGACGGGGG--GAG 502 Query 1108 GATTGACCAGATCTCGGCCGCCGTGGAGCTGCTTCG-CGAGGACCCTGACTCGCGCCGGA 1166 || |||||| |||| | || | |||| | | || || ||| ||||| || ||| Sbjct 501 CATCGACCAGCTCTCCGACGTGATCGAGCAGATCCGACGCTCGCCC-GACTCCCGTCGGC 443 Query 1167 ACGTGGTATCCGCATGGAACGTCGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACA 1226 | | || || || |||||| | ||| || |||||||| || || || ||| Sbjct 442 TCATCGTGTCTGCCTGGAACCCGGCCGACATCCCGGACATGGCGCTCGCGCCCTGTCACG 383 Query 1227 TCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTGCAGGTCTACCAGCGCAGCG 1286 |||||||| | ||||||| ||||||| ||||||| ||| | || |||||||||| Sbjct 382 CGCTGTTCCAGTTCTACGTCGCCGACGGCAAGCTCTCGTGTCAGCTGTATCAGCGCAGCG 323 Query 1287 CGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGT 1346 | |||||||||||||||||||||||||| |||||||| ||||| | || | ||| Sbjct 322 CCGACATGTTCCTCGGTGTGCCGTTCAACATCGCCTCCTACGCCTTGCTGACCATGATGA 263 Query 1347 TCGCGCAGCAGGCCGGCCTGCGGGTGGGTGAGCTGATCTGGACCGGCGGCGACTGCCACA 1406 |||| ||||||| ||||| | || || | ||||||| ||||| ||||||||| Sbjct 262 TCGCCCAGCAGGTGGGCCTCGAGCCCGGAGACTTCGTCTGGACGGGCGGAGACTGCCACG 203 Query 1407 TCTACAACAACCACGTCGACCAGGCGCTGATGCAGCTCCGCCGACGACCGCGGCCCTACC 1466 ||||| |||| |||||||| |||| || | ||||||| |||| || ||||||| Sbjct 202 TCTACGACAATCACGTCGATCAGGTGCGGGAGCAGCTCAGCCGTGAGCCCTACCCCTACC 143 Query 1467 CGAGGCT-CGTGCTACAC-CACGCGCCG--TCGATCTTCGACTACCGGTACGAGCACATC 1522 ||| ||| ||| | | | || ||| ||||| |||||||||| || ||| || || Sbjct 142 CGACGCTGCGTTTCGCGCGGAAGC-CCGAATCGATTCTCGACTACCGCTATGAGGACTTC 84 Query 1523 CACCTCGTGAACTACGACCCGCACCCGTCGATCAAGGCGCCGGTGGCCGTCTGA 1576 | | | | | |||| | | ||| || |||||| |||| ||||||| || ||| Sbjct 83 CTCGTGGAGGACTATCAGCACCACGCGCCGATCAGGGCGGCGGTGGCGGTATGA 30 >seq1087 Length=202632 Score = 131 bits (144), Expect = 1e-25 Identities = 342/505 (68%), Gaps = 30/505 (6%) Strand=Plus/Minus Query 948 ACGAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCG 1007 |||| || ||||||||||| | ||||| |||||| | ||||| || ||||||| Sbjct 83788 ACGAGCTGCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCG 83729 Query 1008 TCACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGC 1067 | || |||||||| || |||||||||| ||| | ||||| || ||||| ||| | Sbjct 83728 TGACGATCTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATC 83669 Query 1068 AGTGGCGGCACTGGCATGT---CGA-GGACGGAGGATCG-TCGTGGATTGACCAGATCTC 1122 ||||||| ||||| || ||| || ||| |||| || ||||| | ||||| Sbjct 83668 AGTGGCGCTCCTGGCCTGCGCCCGACGGCCGGCATATCGATCA--GATTG--CGAATCTC 83613 Query 1123 GGCCGCCGTGGAGCTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATG 1182 | | | || || | |||| | ||||| || | || |||||||| Sbjct 83612 GTCAGT------GCGATAAAGCAAAATCCCT-ATTCGCGGCGTCTGATCGTTTCCGCATG 83560 Query 1183 GAA--CGTCGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTG 1240 ||| || || | | || || ||||| || | || |||||| | |||||||| | Sbjct 83559 GAATCCGGCGCT--CGTCGATGAAATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTC 83502 Query 1241 TACGTCGTCGACGGCCGGCTCTCGCTGC-AGGTCTACCAGCGCAGCGCGGACATGTTCCT 1299 ||||| | |||||| ||| || |||| || ||||||||||| ||| || || || || Sbjct 83501 TACGTGGCCGACGGAAAGCTTTC-CTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCT 83443 Query 1300 CGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGC 1359 ||| ||||||||||||||||| || || || || || | | |||| | |||||| | Sbjct 83442 CGGCGTGCCGTTCAATATCGCATCCTATGCCCTGCTGACCCTCATGGTGGCGCAGGTCAC 83383 Query 1360 CGGCCTGCGGGTGGGTGAGCT-GATCTGGACCGGC--GGCGACTGC-CACATCTACAACA 1415 || |||| | |||||| | | || || || ||||| ||| || |||| || Sbjct 83382 GGGTCTGCAGCCGGGTGATTTCGTTC---ACACGCTGGGCGA-TGCGCATCTCTATGCCA 83327 Query 1416 ACCACGTCGACCAGGCGCTGATGCA 1440 |||| |||| ||||||| | |||| Sbjct 83326 ACCATTTCGAGCAGGCGCGGCTGCA 83302 >seq5294 Length=478 Score = 120 bits (132), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 1230 TGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTGC-AGGTCTACCAGCGCAGCGCG 1288 |||||||| | ||||| || |||||| |||| ||||| || | ||||||||||||| Sbjct 220 TGTTCCAGTTCTACGTGGTGGACGGCAAGCTCA-GCTGCCAGTTGTACCAGCGCAGCGGC 278 Query 1289 GACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTC 1348 ||||| ||||| || ||||||||||| |||||| ||||| || ||| | |||||| | Sbjct 279 GACATCTTCCTGGGCGTGCCGTTCAACATCGCCAGCTACGCACTGCTCACCCACATGGTG 338 Query 1349 GCGCAGCAGGCCGGCCTGCGGGTGGGTGAGCTGATCTGGACCGGCGGCGACTGCCACATC 1408 |||||| |||| ||| | ||||| || | | ||| |||||| || | Sbjct 339 GCGCAGGCCACCGGGCTGGGCGTGGGCGACTTCGTGCATACCCTGGGCGACGCGCATCTG 398 Query 1409 TACAACAACCACGTCGACCAGGCGC 1433 ||| ||||||||| |||||||||| Sbjct 399 TACTCCAACCACGTTGACCAGGCGC 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296082903037182