Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq5514 354 3e-93 seq2755 253 7e-63 seq10553 185 3e-42 >seq5514 Length=778 Score = 354 bits (392), Expect = 3e-93 Identities = 522/750 (70%), Gaps = 42/750 (6%) Strand=Plus/Plus Query 39300 ACCTGCTCCTGGTAGATGACCAGCCCGTAGGTCGGCCCCAGGATCTCGGCAAGCGGCTCC 39359 ||||||||||||||||||| |||||||||| | | ||||||||||||| |||||| || Sbjct 24 ACCTGCTCCTGGTAGATGATGAGCCCGTAGGACTCCTCCAGGATCTCGGCGAGCGGCGCC 83 Query 39360 TCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTC 39419 |||| |||||||||||||||||||||| ||||| |||||||||||| || || |||||| Sbjct 84 TCCAGCTCGGGGTGGATCGGCGTGATCTCCTGCACCCCGTTCTTGCGCAGCGCATAGTTC 143 Query 39420 GTGTGCGAGCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCGCTGATGTCC 39479 ||||||||| | ||||| |||||||| || ||||| |||| || ||| |||||| Sbjct 144 GTGTGCGAGTTGGCTCCCATGGGACCCGGCCGATACAGGGCGATGAGGGCCGAGATGTCA 203 Query 39480 TCGAAGTTGTCCGGCTTCAGCAGGCGGAGCAGTGAGCGCATC------------------ 39521 |||||||||| ||||||| ||| || | || Sbjct 204 CCGAAGTTGTCGGGCTTCATCAGACGCATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN 263 Query 39522 ------------------GCGCCG--CCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCC 39561 ||| || | ||||||||||||||| || |||||||| | Sbjct 264 NNNNNNNNNNNNNNNNAAGCGGCGGGCTGTCGAGCTGGAAGACGCCCAGGGTGTCGCCGC 323 Query 39562 TGGCCAGCAGCTCGTAGGTAGCAACGTCGTCCAG--CGGGATGTTCTCCAGGTCGACGTG 39619 || ||||||| ||| | |||||| || || ||||||| ||||||| | Sbjct 324 GCGCGAGCAGCTGGTACACGCCGGGGTCGTCGAGACCGAGATGTTCG--AGGTCGAGCTC 381 Query 39620 CTCCCCACGGTTGGCGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAG 39679 || |||||||| | ||||||||| |||| ||| || |||||||||||||||||||| Sbjct 382 TTCGCCACGGTTCGTGCGGATGTTGTCGAGCGCATCCGAGATGATCGTGAGGTTCCGGAG 441 Query 39680 CCCGAGGAAGTCCATCTTCACCGCGCCCAGGCTCTCGCACTGGGGGTAGTCCCACTGCGT 39739 ||| |||||||||||||| | | || ||| ||||||| |||||||| ||||||| Sbjct 442 CCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCACGACGGGTAGTCGAACTGCGT 501 Query 39740 CACGGTCACGCCGTCCGCAGGGCGGACCCACACCGGGAGGTGATCGACCAACGGCTCGTT 39799 ||| || ||| || |||| | | ||| | | |||| | ||| ||| Sbjct 502 GACGATCTGCCCGGCCTGCTCGCGGCGCATGATCGGAATGATGTCGAGGAGCGGATCGGA 561 Query 39800 GGACATGATCACACCGGCCGCGTGAACGCCCATCTGCCGGACGAGACCTTCGAGCCCGAG 39859 ||||||||||| ||||| ||||| |||||| ||| || || |||||||| || || Sbjct 562 CGACATGATCACGCCGGCGGCGTGCACGCCCCACTGGCGCTTCAGCCCTTCGAGACCCAG 621 Query 39860 CGCAGTGTCGATGACCTGCTTCGAGTCCGGGTCGTTCTCGTACAGCCCACGGATCTCGCC 39919 ||| ||||| |||| ||||| || || || ||||| ||| | || ||||| Sbjct 622 CGCGCGGTCGAAGACCGTCTTCGCCTCGGGATCCGTCTCGATCAGGGTCCTGAACTCGCT 681 Query 39920 CGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATGCCCTCCAGGGGCATCGAGTTGCC 39979 ||| || | ||| | |||||| | | || ||| ||||| || |||||||| ||||| Sbjct 682 CGCTTCCTTGTACCTCGGGTGAGCAGAGTCGAACATGCCGTCGAGGGGCATGTCCTTGCC 741 Query 39980 CATCACGTCGGCCGGGTACGCCTTGGTCAG 40009 ||||||| | ||| ||||||||| || Sbjct 742 CATCACGGGCGGCGGCATCGCCTTGGTGAG 771 >seq2755 Length=1107 Score = 253 bits (280), Expect = 7e-63 Identities = 638/948 (67%), Gaps = 55/948 (6%) Strand=Plus/Minus Query 40492 CCTCGGTGTGACCCTCGGGCACGGGGAAGCGGGGCATGAGGTCGGT----GTGCTCGAAC 40547 ||||||| | || |||||||| |||||||| |||||| || || ||| | |||| Sbjct 1017 CCTCGGTCTCGCCGTCGGGCACAGGGAAGCGCGGCATGTAGTTGGCCGAGGTGTT-GAAC 959 Query 40548 ATGCCAGTCGTGTCGACGCGCTCGGCGATCTCCAGCGTGGTCCGCATCCCCCACTCCCAG 40607 | | ||| ||||||||||||| ||| ||| | || | || | | Sbjct 958 TCGACC------TCGCAGCGCTCGGCGATCAGCAGGGTGTTG----TCACAGGCTTCGGG 909 Query 40608 ATGGGAGAGGAGTCGATGGCCGCCATCTCGGCGGCCGACTTGATGTAGTACCCGGAGCCC 40667 ||| | ||| | |||| ||||||||| || | |||||||||||||||| ||| Sbjct 908 GTGGTCGCGGAACAGTTGGCG--CATCTCGGCCGCGGTCTTGATGTAGTACCCGTCGCCG 851 Query 40668 TCGAACCGGAAGCGGTTCGGGTTGTCGATCGTCGTGCCGGTCTGGACGCAGAGCAGAGCG 40727 |||||| ||| |||||||||| ||| ||||||| || | ||| ||||| || || || Sbjct 850 TCGAACTTGAACCGGTTCGGGTCGTCCATCGTCGATCCCGACTGCACGCACAGGAGCGCC 791 Query 40728 TCGTGCGCGGTGCTCTCCT-CGGCCGTGACGTAGTGCGAGTCGTTCGT---GACCACGGG 40783 ||||||||| | ||| | | | | | ||||||||||||||| || ||||| || Sbjct 790 TCGTGCGCGTCGGCCTCGTGCTGATGCG-TGTAGTGCGAGTCGTTGGTGGCGACCAGCGG 732 Query 40784 GGTGAGCGCGAGGTGCTTGCCCAGCCGGTAGAGGTCGTCGCGGACACGCCGCTCGATCTC 40843 | || | |||| ||| || ||| ||| ||| || |||||||||||| Sbjct 731 GATGTTC---AGGTCCTTCGAGAGACGGAGGAGATCGGTCATCACGCGCCGCTCGATCGA 675 Query 40844 CAGGCCGTGGTCCATGATCTCCAGGAAGTACCGGTCCCGACCGAAGACCTCCAGGTAC-C 40902 ||| ||||||||||||||||| |||||| ||| ||||| | ||| || || | Sbjct 674 CAGACCGTGGTCCATGATCTCGGCGAAGTAGTTCTCCTTGCCGAACAGGTCCTGGAACTC 615 Query 40903 GGC--CAGCCTCG-GCAACGGCCTCGTCGTACTGCCCGAGGTTGAGCCGGGTCATGATCG 40959 ||| | ||| || || || |||||||||| ||||| || || ||| |||| Sbjct 614 GGCTGCGGCCGCGCGC----GCAGCGTCGTACTGTCCGAGACGCAGGCGCGTCTGGATCT 559 Query 40960 CACCGCCAGGGCATCCCGTGGTGACGATCAGGCCCTCGTTGT-GCTCGGCGACCAGGTCG 41018 | || |||||||| ||||| ||||||| || | | | | || || | ||| ||| Sbjct 558 CGCCTGACGGGCATCCGGTGGTCGCGATCAGTCCTTTGGAATAGGTCTGC-AGCAGCTCG 500 Query 41019 AAGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCCTGGTACGAGCGGGAGCTGAGCTT 41077 |||||||||||| ||| | || | ||||||| | ||| |||||||||||| Sbjct 499 CGGTCCATGCGCGG---CTTGAAGTAGTA-GCCCTCCATGCTCGACCGGGAGCTGAGCCG 444 Query 41078 CATGAGGTTGTGCAGGC---CGGT-CTTGTTCTCCGCGAGGATCGTGAGGTGCGTGTACG 41133 | |||||||||| || |||| || |||| | || || | ||| ||||||| Sbjct 443 GAACAGGTTGTGCATGCCCTCGGTGCTCTGACTCCAC----ATGGTCATGTGGGTGTACG 388 Query 41134 CACCGCGACCGCTCACGTCGTAACGCTTCTGGTCCTCGGTGCCCCACTTGACGCGCTCCT 41193 ||||| ||| ||||||| | |||||| || | |||||||| |||||| || Sbjct 387 CACCGGAACCCGAGACGTCGTCGCTCTTCTGATCGGGCGAGCCCCACTGCACGCGCGTCT 328 Query 41194 GGTC---GAAGCGCGAGCCCGGAGCCATGTACGCCTCGATGCCGATGATCGGCTTGACCC 41250 ||| | | ||| ||| |||| | || ||||||| ||||||||||||||||| | Sbjct 327 TGTCACTGCGGTGCGTGCCGGGAGTGACATAGGCCTCGAGCCCGATGATCGGCTTGACAC 268 Query 41251 CAGCGGCCTGAGCCGTGGTGAAGAAGTCGTGGGCACCGTGCAGGTTGCCGTGGTCAGTGA 41310 | ||||| | |||| || |||| ||| || || ||||||||| || || | Sbjct 267 CCGCGGCATTGGCCGCCTTGTAGAACTCGAAAGCCGCGAAAGTGTTGCCGTGATCGGTCA 208 Query 41311 CTGCGACTGCCGGGGAGCCCTGTCG--GGCAACCTCGGCGACCATTTGCTTCATCCGAGC 41368 | |||| ||| || | ||| | ||| || | | ||| || ||| || Sbjct 207 CCGCGATGGCC--GGCATCTTGTAGTCGGCGGCCGCCTGGGTCATCGCGTTGATCTTCGC 150 Query 41369 GGCCCCGTCGAGGAGCGAGTACTCGGAGTGGTTGTGGAGGTGGACGAA 41416 || |||||||| | |||||||||| ||| ||| ||||||||||| Sbjct 149 CGCTCCGTCGAGCATCGAGTACTCGCTGTGCACGTGCAGGTGGACGAA 102 >seq10553 Length=379 Score = 185 bits (204), Expect = 3e-42 Identities = 273/383 (71%), Gaps = 9/383 (2%) Strand=Plus/Plus Query 38865 AGCCCGAAGCGGATCTCCGTCTTCCCGTTCGGGGTGAAGGAGCTGTTCGAGACCGACACG 38924 || ||||||||||| || ||| ||| | | |||| || || ||||| | || || Sbjct 1 AGGCCGAAGCGGATGTC-GTCG--CCGACGGCCGCGAAGAAGTTGATCGAGTCGGAGACA 57 Query 38925 TCGGGCGGCAGGACGTGAAGTCCCATCCGCCGTGCCTCGCCGAGGTACGTGGCCATCTTG 38984 |||||||| ||||| | | ||||| || || ||| ||||| ||||||||| Sbjct 58 TCGGGCGGAAGGACCTTGATGCCCATGCGGCGGCACTCATTCAGGTAAAGCGCCATCTTG 117 Query 38985 TTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTC 39044 | |||| |||||| || |||||||| ||||||||||||||||| |||||||||| | Sbjct 118 TCCTTGGAGTCGCCGACGCTGGTGAGCAGCGCCGCCATGTACTCGGCGGGGTAGTGCGCC 177 Query 39045 TTCAGGTACGCCGTGCGGTAGGCGATGAGACCGTACGCCGCAGAGTGCGCCTTGTTGAAG 39104 || ||||| || || | || | || ||||||||| || || ||||| || ||||||||| Sbjct 178 TTGAGGTATGCGGTCCAATACGAGACGAGACCGTATGCGGCGGAGTGGGCTTTGTTGAAG 237 Query 39105 GCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCACCGTCCGAGTAG 39164 ||||| | | |||||| | || | |||||||| ||||| |||||| | || | | Sbjct 238 GCGTAGTCCGAGAAGGGCAGCAGGATGTCCCACAGCGCCTTGATGGCCGCCTCGCCGAAT 297 Query 39165 CCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGG---GC 39221 || |||||| | || | |||| || ||| |||| | || ||||| | Sbjct 298 CCGCGCTCGGTCATACCGCCCGCGAAGCCTTCGTACTGCTTGTCGAG---CTCGGACTTC 354 Query 39222 TTCTTCTTGCCCATGGCTCGGCG 39244 |||||||||||||| ||||| || Sbjct 355 TTCTTCTTGCCCATCGCTCGACG 377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160115351825296