Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq1310 138 2e-27 seq1087 113 7e-20 seq1270 100 4e-16 seq93 98.7 2e-15 seq5955 95.1 2e-14 >seq1310 Length=146132 Score = 138 bits (152), Expect = 2e-27 Identities = 180/248 (73%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 201841 AAAAGC-CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTA 201899 |||||| |||| | || || || |||||| || | |||| || | |||||| | || | Sbjct 104750 AAAAGCACGACAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCA 104809 Query 201900 ACTTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCC 201959 || | || ||||| ||||| ||||||||||||||||| |||| | || || |||| Sbjct 104810 ACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCC 104869 Query 201960 ATGAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACG 202019 | || ||| | ||||| | | || |||||||| || || |||||| ||||| | Sbjct 104870 ACGAACTGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATG 104929 Query 202020 TCACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGC 202079 | | |||||||| || ||||| ||| ||||||||||| | ||||| || || || | Sbjct 104930 TAAAGATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCAC 104989 Query 202080 AATGGCGT 202087 |||||||| Sbjct 104990 AATGGCGT 104997 >seq1087 Length=202632 Score = 113 bits (124), Expect = 7e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906 |||||||||||| || ||||| | || |||||||| ||||||||| || | | Sbjct 83901 CGACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTC 83842 Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966 | |||||||| | || ||||| || | || || || |||||||| ||||| Sbjct 83841 GGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCT 83782 Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026 |||||||||||| | || || || |||||| ||| | || || ||| ||| || || Sbjct 83781 GCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGAT 83722 Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 |||||| |||||||| || | ||||| || | || ||||| || || | || ||||| Sbjct 83721 CTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 83662 >seq1270 Length=19972 Score = 100 bits (110), Expect = 4e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 614 GGGGAGTAGTTCAACTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGCAGGTTCGAGTC 673 ||||||||| ||| |||||||||| ||||||||||||||| | || |||||||||| || Sbjct 3682 GGGGAGTAGCTCAGTTGGTAGAGCGGCGGTCTCCAAAACCGTAGGTCGCAGGTTCGAATC 3741 Query 674 CTGTCTCCCCTGCCA 688 ||||||||||||||| Sbjct 3742 CTGTCTCCCCTGCCA 3756 >seq93 Length=584700 Score = 98.7 bits (108), Expect = 2e-15 Identities = 204/304 (67%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 201791 ATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGAC 201850 ||||||||||| | || ||| | | ||| |||||||| || ||||| ||| Sbjct 272961 ATGAAACAATACTTAGATTTAGTAAAATACGTTTTAGAAAACGGCAATCAAAAAGGTGAC 272902 Query 201851 CGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGAA 201910 || || || || || || |||||| || ||||||||| ||| | ||| ||| Sbjct 272901 CGAACAGGAACAGGAACGAAAAGTGTTTTTGGCTACCAGATGCGTTTTGATTTAAGTGAA 272842 Query 201911 GGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCTG 201970 ||||| || |||| || || ||||| | || | || |||||| | || |||| Sbjct 272841 GGTTTCCCAATGGTTACGACAAAAAAACTCCATTTAAAATCGATCATCTACGAATTGCTT 272782 Query 201971 TGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTGG 202030 ||||| | | || || || || || | ||| | || || || || | |||||| Sbjct 272781 TGGTTTTTAAAAGGAGATACAAATATTAAATATCTTAAGGAAAATGGAGTTAAAATCTGG 272722 Query 202031 GACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTAGC 202090 ||||||||||| ||| || || || ||||| || || ||||| | |||||||||| Sbjct 272721 GACGAATGGGCTGATTCTAATGGCGATTTAGGACCTGTTTACGGACATCAATGGCGTAAT 272662 Query 202091 TGGA 202094 |||| Sbjct 272661 TGGA 272658 >seq5955 Length=632 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 202490 CTTTCTTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATC 202549 || || |||||||| |||||||| || || ||||||||||| || || ||||| |||||| Sbjct 350 CTCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAACATC 291 Query 202550 GCGTCTTACGCCTTGCTGGTACACATGTTTGCACAACAGGCGAACATGGCGGTAGGCGAC 202609 || || |||||||||||| ||| | || || |||| | | | | | || ||| Sbjct 290 GCCTCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGGTGGGCCTCGAGCCCGGAGAC 231 Query 202610 TTCGTCTGGACAGGTGGTGA 202629 ||||||||||| || || || Sbjct 230 TTCGTCTGGACGGGCGGAGA 211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787871386764720