Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq5955 102 1e-16 seq1087 93.3 7e-14 seq1270 89.7 8e-13 >seq5955 Length=632 Score = 102 bits (112), Expect = 1e-16 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 200834 GCGAGCTTTCCTGTCAGCTGTATCAGCGTAGCGCTGATATGTTTTTAGGCGTGCCGTTCA 200893 || |||| || ||||||||||||||||| ||||| || ||||| | || |||||||||| Sbjct 355 GCAAGCTCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCA 296 Query 200894 ACATTGCATCATACGCACTACTGATTCACATGGTAGCCCAACAGGTCAATATGACTGTCG 200953 |||| || || ||||| | |||| ||| | ||||| ||||| | || Sbjct 295 ACATCGCCTCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGGTGGGCCTCGAGCCCG 236 Query 200954 GTGATTTCGTATGGACGGGTGGTGACGTACACATCTACAGCAATCACGAAGAGCAGGTTC 201013 | || ||||| |||||||| || ||| ||| ||||| |||||||| || ||||| | Sbjct 235 GAGACTTCGTCTGGACGGGCGGAGACTGCCACGTCTACGACAATCACGTCGATCAGGTGC 176 Query 201014 G 201014 | Sbjct 175 G 175 >seq1087 Length=202632 Score = 93.3 bits (102), Expect = 7e-14 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 200098 GACCGTACCGGTANNNNNACCACGT-CTATTTTCGGTGCACAGATGCGCTTCAATCTACA 200156 ||||||||||| | || |||| | ||||||| |||||||| ||| |||| Sbjct 83900 GACCGTACCGGGACAGGCAC-ACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTC 83842 Query 200157 AGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCACGAGCT 200216 | || || || ||||||||||||| |||||| |||||||| |||||||| Sbjct 83841 GGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCT 83782 Query 200217 GTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGTCACCAT 200276 | |||||||||| || || || || || ||| ||||| || || ||| || || || Sbjct 83781 GCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGAT 83722 Query 200277 TTGGGACGAATGGGC 200291 ||||| |||||||| Sbjct 83721 CTGGGATGAATGGGC 83707 >seq1270 Length=19972 Score = 89.7 bits (98), Expect = 8e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 976 TAGGGAAGTAGCTCAGCAGGCAGAGCGCTGGTCTCCAAAACCAGATGTCGCAGGTTCGAT 1035 ||||| |||||||||| || |||||| ||||||||||||| | ||||||||||||| Sbjct 3680 TAGGGGAGTAGCTCAGTTGGTAGAGCGGCGGTCTCCAAAACCGTAGGTCGCAGGTTCGAA 3739 Query 1036 TCCTGTCTTCCCTGCCA 1052 |||||||| |||||||| Sbjct 3740 TCCTGTCTCCCCTGCCA 3756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783228963456000