Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq1310 161 2e-34 seq1087 141 1e-28 seq93 96.9 5e-15 seq5955 95.1 2e-14 >seq1310 Length=146132 Score = 161 bits (178), Expect = 2e-34 Identities = 222/308 (72%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 196010 GCTGATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACGAGAAAGC 196069 || ||||||||| || || || || ||||| |||| || || | || || ||||| Sbjct 104697 GCAGATGAAACAATACTTAGATTTAATGCAGCTCGTGCTGGACCAGGGA-ACACAAAAGC 104755 Query 196070 T-GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGC 196128 ||| | || || || ||||||||| |||||| || |||||||| | || |||| | Sbjct 104756 ACGACAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAACCTCC 104815 Query 196129 GCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAAC 196188 |||| || || ||||||||||||||||| | || | ||| || |||||||||| Sbjct 104816 AGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCACGAAC 104875 Query 196189 TGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTA 196248 || | ||||| | | || |||||||| || || ||||||| ||||| || | | Sbjct 104876 TGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTAAAGA 104935 Query 196249 TCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGC 196308 |||||||||||||||| |||||| | || || || ||||| || || || || |||| Sbjct 104936 TCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGGC 104995 Query 196309 GTGCATGG 196316 || ||||| Sbjct 104996 GTTCATGG 105003 >seq1087 Length=202632 Score = 141 bits (156), Expect = 1e-28 Identities = 177/240 (74%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTG-CG 196129 ||||||||||| || ||||| || ||||||| || |||||||| || || ||| || Sbjct 83900 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 83841 Query 196130 CAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACT 196189 | |||| || | || ||||| || |||| || ||| ||||||||||| || Sbjct 83840 GCGGGTTTTCCTGCCC-TGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCT 83782 Query 196190 GTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 196249 | ||||||||||||| ||||| || |||||| ||||| || || ||| ||| | || Sbjct 83781 GCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGAT 83722 Query 196250 CTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||||||||| ||||| || || | |||||||| || || ||||| || | |||||||| Sbjct 83721 CTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 83662 Score = 93.3 bits (102), Expect = 7e-14 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 || ||||| ||||| ||||||||| || || |||| ||||| || |||||||| ||| Sbjct 83483 CTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATC 83424 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAA---TATGGTGGCGGGT 196865 || || || || ||| || | ||||||||| |||||||| | || | ||||| Sbjct 83423 GCATCCTATGCCCTGCTGACCCTCATGGTGGC---GCAGGTCACGGGTCTGCAGCCGGGT 83367 Query 196866 GATTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGC 196921 |||||||| ||| |||||| | ||||| || | |||||| | || ||||| Sbjct 83366 GATTTCGTTCACACGCTGGGCGATGCGCATCTCTATGCCAACCATTTCGAGCAGGC 83311 >seq93 Length=584700 Score = 96.9 bits (106), Expect = 5e-15 Identities = 169/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 196065 AAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGAC 196124 |||| |||||| || || || || || | | |||| || || |||||||||||||| Sbjct 272910 AAAGGTGACCGAACAGGAACAGGAACGAAAAGTGTTTTTGGCTACCAGATGCGTTTTGAT 272851 Query 196125 CTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCAC 196184 | | |||| ||||| |||| || || ||||| | || | ||| |||||| || Sbjct 272850 TTAAGTGAAGGTTTCCCAATGGTTACGACAAAAAAACTCCATTTAAAATCGATCATCTAC 272791 Query 196185 GAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTC 196244 ||| || | ||||| | || || || || || || | ||||| || || || || Sbjct 272790 GAATTGCTTTGGTTTTTAAAAGGAGATACAAATATTAAATATCTTAAGGAAAATGGAGTT 272731 Query 196245 AGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAG 196304 | |||||||| || ||||| ||| |||||||| | || || || ||||| | || Sbjct 272730 AAAATCTGGGACGAATGGGCTGATTCTAATGGCGATTTAGGACCTGTTTACGGACATCAA 272671 Query 196305 TGGCGT 196310 |||||| Sbjct 272670 TGGCGT 272665 >seq5955 Length=632 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 || || |||||||| || |||||||| || ||| | ||||||||||| |||||||||||| Sbjct 350 CTCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAACATC 291 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGAT 196868 || || ||||| || || ||| | || |||||||| | | | | || || Sbjct 290 GCCTCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGGTGGGCCTCGAGCCCGGAGAC 231 Query 196869 TTCGTCTGGACGGGCGGCGA 196888 ||||||||||||||||| || Sbjct 230 TTCGTCTGGACGGGCGGAGA 211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770178346863120