Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq5955 149 2e-31 seq1310 127 8e-25 >seq5955 Length=632 Score = 149 bits (164), Expect = 2e-31 Identities = 321/469 (68%), Gaps = 12/469 (3%) Strand=Plus/Minus Query 51910 AGTACGGCGTCAGCATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGT 51969 || |||| |||| || |||||||| ||||| |||||| || |||| || || || | Sbjct 604 AGAACGGGGTCACGATCTGGGACGAGTGGGCCGATGAATCCGGCGACCTCGGCCCGGTCT 545 Query 51970 ATGGTAAGCAGTGGCGTAGTTGG--GATGCTGGTGGCGGCAAGGTCATCGATCAGATCCA 52027 | || |||||||||| ||| || || || | || || |||||| ||| || Sbjct 544 ACGGGGTGCAGTGGCGTTCGTGGCCGACGCCGGACGGGGGGAG--CATCGACCAGCTCTC 487 Query 52028 TGAAGTCGTCAAATCAATTAAGAACGATC--CTGATAGTCGACGGCACATTGTCTCTGCT 52085 || || || | || | || || || | || || |||| ||| || ||||| Sbjct 486 CGACGTGATCGAG-CAGATCCGA-CGCTCGCCCGACTCCCGTCGGCTCATCGTGTCTGCC 429 Query 52086 TGGAATGTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTC 52145 ||||| || || | || |||||| | || ||||| || | || ||||| ||| Sbjct 428 TGGAACCCGGCCGACATCCCGGACATGGCGCTCGCGCCCTGTCACGCGCTGTTCCAGTTC 369 Query 52146 TATGTAGCTGAAGGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTG 52205 || || || || || ||||| ||||| || |||||||||| |||||||||||| | Sbjct 368 TACGTCGCCGACGGCAAGCTCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTC 309 Query 52206 GGCGTTCCGTTTAACATTGCCAGCTATTCCTTGCTGACGCAT-CTGATTGCTCGAGCA-G 52263 || || ||||| ||||| ||| ||| |||||||||| ||| |||| || | |||| | Sbjct 308 GGTGTGCCGTTCAACATCGCCTCCTACGCCTTGCTGAC-CATGATGATCGC-CCAGCAGG 251 Query 52264 TTGGCCTTGATGTTGGTGAATTCATTTGGACTGGTGGCGACGTCCATATCTACAACAACC 52323 | ||||| || || || ||| | ||||| || || ||| ||| ||||| |||| | Sbjct 250 TGGGCCTCGAGCCCGGAGACTTCGTCTGGACGGGCGGAGACTGCCACGTCTACGACAATC 191 Query 52324 ATGTAGATCAGGTTAGGGAACAGTGTAGTCGCGTGCCATATCCGTTCCC 52372 | || |||||||| |||| ||| || || | ||| || || | ||| Sbjct 190 ACGTCGATCAGGTGCGGGAGCAGCTCAGCCGTGAGCCCTACCCCTACCC 142 >seq1310 Length=146132 Score = 127 bits (140), Expect = 8e-25 Identities = 225/324 (69%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 51924 ATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGG 51983 || ||||| || ||||| |||||||| ||| ||||||| ||||| ||||| || ||| Sbjct 104935 ATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGG 104994 Query 51984 CGTAGTTGGG---ATGCTGGTGGCGGCAAGGTCATCGATCAGATC-CATGAAGTCGTCAA 52039 ||| ||| | | | |||||| | ||| || ||||| || || | ||| Sbjct 104995 CGTTCATGGCCAAAACCAGATGGCGGGCA---CATTGACCAGATTACACAAATTATACAA 105051 Query 52040 ATCAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGA 52099 | | || || ||| |||| ||| || || ||||| ||||| |||||||||| || Sbjct 105052 A-CTATAAAAAACAATCCCGATTCCAGAAGGATTATTGTGTCTGCCTGGAATGTGGCAGA 105110 Query 52100 TTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGG 52159 | || ||||||| | | ||||||||| | | ||||| || ||||||||||| || Sbjct 105111 GATAGAACATATGGCACTTCCACCCTGCCATGCCTTTTTCCAGTTTTATGTAGCTGACGG 105170 Query 52160 TAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAA 52219 || || || || | |||||||| ||| || || || |||| || || ||||| Sbjct 105171 AAAACTGAGCTGTCAGCTTTATCAGCGAAGTGCAGATATTTTTCTGGGGGTACCTTTTAA 105230 Query 52220 CATTGCCAGCTATTCCTTGCTGAC 52243 ||||||| |||| |||| ||||| Sbjct 105231 CATTGCCTCCTATGCCTTACTGAC 105254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190065791607020