Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq444 143 6e-29 seq1158 116 9e-21 seq60 102 2e-16 seq974 87.8 4e-12 >seq444 Length=38654 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| ||||| ||||| ||||| |||||||||||||| || | | ||| | Sbjct 5263 GAGACGGAGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACG 5204 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || |||||||| || | || ||||| | | ||| ||||| Sbjct 5203 ACCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGTTGTTGGTCAGGTGGGATACCTTC 5144 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || |||||| |||| | | |||| |||| ||| || |||||||| Sbjct 5143 CTTGTCTTGGATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGACCTCAAGAGT 5084 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||| ||||||| ||||| Sbjct 5083 GATGGTCTTACCAGTGAGGGTCTTAACGAAGATTTGCAT 5045 Score = 118 bits (130), Expect = 2e-21 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | |||||||| ||||| ||||||||||||||||||| | ||| | Sbjct 5035 GAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACG 4976 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || ||||| ||||| || | || ||||| | | ||||| || Sbjct 4975 ACCATCCTCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGAATTCCCTC 4916 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || ||||| |||| | | || |||| ||| || || | || Sbjct 4915 CTTGTCTTGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCCTCGACCTCCAAGGT 4856 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||| ||||| || ||||| || || |||| |||||| Sbjct 4855 AATAGTCTTGCCTGTCAGAGTTTTAACAAAGATTTGCATT 4816 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || || ||||| ||||||||||||||||||| | ||| | ||||| Sbjct 5484 AGAACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCC 5425 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| || | || ||||| | | ||| || ||||| ||| Sbjct 5424 TCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCT 5365 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| |||| | | || |||| || || ||||| || || || Sbjct 5364 TGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCTTCGACCTCAAGGGTGATGGTC 5305 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||||| ||||| Sbjct 5304 TTACCAGTGAGGGTCTTGACGAAGATTTGCAT 5273 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| ||||| |||||||||||||| || | | || | ||||| || | Sbjct 5707 CAAG-TGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTCAA 5649 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| || | || ||||| | | ||| || ||||| ||||||| Sbjct 5648 GTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTGAA 5589 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| |||| | | |||| |||| ||| || || ||||| || || || | Sbjct 5588 TCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGACCTCGAGAGTGATGGTCTTAC 5529 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||||| ||||| Sbjct 5528 CAGTCAAGGTCTTGACGAAGATTTGCAT 5501 >seq1158 Length=25781 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||| || ||||| ||||| ||||||||||||| | ||| | Sbjct 9261 GAGACGGAGCACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAGAGAGTGCG 9320 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || ||||||||||| || | || || || | | ||| || || Sbjct 9321 ACCATCCTCGAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATACCCTC 9380 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||| || ||||| |||| | | | || |||| ||| || || | || Sbjct 9381 CTTATCTTGAATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGACCTCCAAGGT 9440 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || ||||| ||||| ||||| | |||||| Sbjct 9441 AATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 9479 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| ||||| ||||| |||||||||||||| |||| | || | || || Sbjct 9039 GAGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTACGACCGTC 9098 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| || | || || || | | ||| || ||||| || Sbjct 9099 CTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTGTC 9158 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| || ||||| |||| | | | || |||| ||| || ||||| || || || Sbjct 9159 TTGAATCTTGGTCTTGACGTTCTCGATGGTATCAGAACCCTCAACCTCAAGGGTGATGGT 9218 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||||| || |||| ||||| Sbjct 9219 CTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 9251 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || ||||| ||||| |||||||||||||| |||| | || | Sbjct 9717 GAGACGGAGAACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCG 9776 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || || ||||| || | || ||||| | | ||| || || Sbjct 9777 ACCATCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTC 9836 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || ||||| |||| | | | || |||| ||| || || | || Sbjct 9837 CTTATCTTGGATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTCCAAGGT 9896 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| || || ||||| || |||| ||||| || Sbjct 9897 GATGGTCTTGCCAGTCAGTGTCTTTACAAAGATTTGCATGTT 9938 >seq60 Length=27343 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| |||||||||||||| || | | || | ||||| || | Sbjct 11535 CAAG-TGGAGGGTTGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGACCATCCTCAA 11593 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || |||||||||||||| | || ||||| | | ||| || ||||| ||||| | Sbjct 11594 GTTGCTTACCGGCGAAGATAAGACGTTGTTGGTCGGGGGGGATACCCTCCTTGTCTTGGA 11653 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| |||| | | |||| || | ||| || || || || || || || | Sbjct 11654 TCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCGACCTCGAGTGTGATGGTCTTTC 11713 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||||| |||||| Sbjct 11714 CTGTCAATGTCTTAACGAAGATCTGCAT 11741 >seq974 Length=18895 Score = 87.8 bits (96), Expect = 4e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || ||||| ||||| || ||||||||||| || | | || | Sbjct 4845 GAGACGGAGGACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACG 4904 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || | || || |||||||| | | || || || | | |||||| || Sbjct 4905 ACCGTCCTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCGGGGGGGATTCCCTC 4964 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || |||||| |||| | | ||||||| | ||| || ||||| || Sbjct 4965 CTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCTGAGCCCTCGACCTCAAGGGT 5024 Query 152066 AATAGTTTTGCCCGTG 152081 ||| || || || ||| Sbjct 5025 AATGGTCTTACCTGTG 5040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153622969491322