Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq287 93.3 5e-14 seq446 91.5 2e-13 seq445 89.7 6e-13 seq237 87.8 2e-12 seq136 84.2 3e-11 seq10414 82.4 9e-11 >seq287 Length=224423 Score = 93.3 bits (102), Expect = 5e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 157426 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGC 157485 ||||||||||||||||||||| | ||||||||||| | |||||||||||||||||||||| Sbjct 12509 GTAGCTCAGCTGGATAGAGCACCGGCCTTCTAAGCCGACGGTCGCTGGTTCGAATCCAGC 12450 Query 157486 C 157486 | Sbjct 12449 C 12449 >seq446 Length=116643 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 17858 AGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 17916 ||||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 2101 AGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGA 2160 Query 17917 GTCCGCTATTCTCCA 17931 |||| ||||||||| Sbjct 2161 CTCCGTTATTCTCCA 2175 >seq445 Length=5314 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 17859 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 17917 |||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 1932 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGAC 1991 Query 17918 TCCGCTATTCTCCA 17931 |||| ||||||||| Sbjct 1992 TCCGTTATTCTCCA 2005 >seq237 Length=124986 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 17858 AGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 17916 ||||| |||||||||| ||| |||||||| ||| | ||| ||| || ||||||||||||| Sbjct 90233 AGGGGGATTAGCTCAGCTGGCTAGAGCGCTTGCCTGGCAGGCAAGAGGTCAGCGGTTCGA 90292 Query 17917 GTCCGCTATTCTCCA 17931 |||||||||||||| Sbjct 90293 CTCCGCTATTCTCCA 90307 >seq136 Length=398197 Score = 84.2 bits (92), Expect = 3e-11 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 158115 TATGGAAAGGTGGTCGAGTGGTTGATGGCTCTGGTCTTGAAAACCAGCG-AAGTGAGAG- 158172 || ||| ||||| |||| |||| | ||| | ||||||||||||| ||| | ||||||| Sbjct 291888 TAAGGAGGGGTGGCCGAGCGGTTTAAGGCACCGGTCTTGAAAACCGGCGTAGGTGAGAGC 291829 Query 158173 CTTCCGTGGGTTCGAATCCCACCCTTTCCG 158202 || ||||||||||||||||||||| |||| Sbjct 291828 CTACCGTGGGTTCGAATCCCACCCCCTCCG 291799 >seq10414 Length=692 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 158206 CGGGGTGTAGCTCAGTTTGGTAGAGCGCCGTCTTTGGGAGGCGGATGCCGTAGGTTCGAA 158265 ||||| ||||||||||||||||||||||| ||||||||| ||| | || |||||| | Sbjct 500 CGGGGCGTAGCTCAGTTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAC 441 Query 158266 TCCTATCACCCCGAC 158280 |||| || ||||||| Sbjct 440 TCCTGTCGCCCCGAC 426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596207452713120