Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq2342 100 7e-17 seq7676 86.0 2e-12 seq6167 86.0 2e-12 >seq2342 Length=4104 Score = 100 bits (110), Expect = 7e-17 Identities = 69/78 (88%), Gaps = 4/78 (5%) Strand=Plus/Plus Query 24245 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTACGAG 24304 ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| Sbjct 1979 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 2038 Query 24305 GATG----TTATTGCTGC 24318 |||| | |||||||| Sbjct 2039 GATGCTGTTCATTGCTGC 2056 >seq7676 Length=607 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 22437 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 22488 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 49 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 100 >seq6167 Length=616 Score = 86.0 bits (94), Expect = 2e-12 Identities = 144/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 26758 CCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGTGC 26817 || || |||||||| || | || | ||| || || || ||| || ||||| |||||| Sbjct 415 CCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGGTGC 356 Query 26818 CACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCA 26877 || |||||||||||| ||| || || || || |||||||| ||||||||| || Sbjct 355 CATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTTTCTGACGTGGCG 296 Query 26878 ACTGTAAGGTTTGCAAATGCCGTTCCTGATGGGTGAATATCTGATTTCTGGATCATGCCC 26937 || |||||||| | || || || | |||| || | || ||| ||||||| || Sbjct 295 ACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTAACGGACTTCCGGATCATTGCC 237 Query 26938 AAGGCGACCAATAATGATCACCTTATT 26964 || || || | | ||| ||||| || Sbjct 236 CAGACGCCCGACGAGGATGACCTTGTT 210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129275453411020