Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq60 159 8e-34 seq444 158 3e-33 seq1158 150 4e-31 seq974 120 7e-22 >seq60 Length=27343 Score = 159 bits (176), Expect = 8e-34 Identities = 161/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | |||||||| || ||||| |||||||| || |||| ||| Sbjct 11738 CAGATCTTCGTTAAGACATTGACAGGAAAGACCATCACACTCGAGGTCGAGGGCTCTGAC 11679 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || ||||| || || ||||| || ||||| ||| Sbjct 11678 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCCGACCAACAA 11619 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || || || || ||||| | || ||| | || || ||| || Sbjct 11618 CGTCTTATCTTCGCCGGTAAGCAACTTGAGGATGGTCGCACCCTTTCGGACTACAACATC 11559 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| || ||||| || || |||| || Sbjct 11558 CAAAAGGAGTCAACCCTCCA-CTTGGTT 11532 >seq444 Length=38654 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || |||||||| ||||| ||| | || || Sbjct 5276 CAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAAGGTTCCGAT 5335 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| || ||||| || || ||||| || ||||| ||| Sbjct 5336 ACTATCGAGAACGTCAAGACCAAGATCCAAGACAAGGAGGGTATCCCACCTGACCAACAA 5395 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || || || || ||||| | ||||| ||||||| ||| || Sbjct 5396 CGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCGATTACAACATC 5455 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || ||||| ||| Sbjct 5456 CAAAAGGAGTCCACCCTCCATCTCGTT 5482 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| ||||| || || || ||| | ||||| || | || || Sbjct 4820 CAAATCTTTGTTAAAACTCTGACAGGCAAGACTATTACCTTGGAGGTCGAGGGTTCCGAT 4879 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| || ||||| || ||||| || || ||||| ||| Sbjct 4880 ACTATCGAGAACGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCACCTGACCAACAA 4939 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || || || || ||||| | ||||| ||||||| ||| || Sbjct 4940 CGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCGATTACAACATC 4999 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| || || || || || |||| || Sbjct 5000 CAAAAGGAGTCCACTCTTCA-CTTGGTT 5026 >seq1158 Length=25781 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || ||||| || || || ||||| |||||||| || | || ||| Sbjct 9704 CAAATTTTTGTTAAGACCCTCACCGGTAAGACCATCACTCTCGAGGTTGAGGGTTCTGAC 9645 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| |||||||| ||||| || || || || || ||||| ||| Sbjct 9644 ACCATCGAGAACGTCAAGACCAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAACAA 9585 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || |||||||| ||||| | ||||| |||| || || | Sbjct 9584 CGTTTGATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGTACTCTCTCCGACTACAATATT 9525 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || ||||| || Sbjct 9524 CAAAAGGAGTCCACCCTCCATCTCGT 9499 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || || ||| | ||||| || | || || Sbjct 9476 CAGATTTTCGTCAAGACCCTCACTGGTAAGACAATTACCTTGGAGGTCGAGGGTTCCGAT 9417 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| |||||||| || || || || ||||| || || || ||| Sbjct 9416 ACCATCGAGAACGTCAAGACCAAGATTCAAGATAAGGAGGGTATCCCACCCGATCAACAA 9357 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || || ||||| ||||| | ||||| ||||||| ||| | Sbjct 9356 CGTCTCATCTTCGCCGGCAAGCAACTCGAGGATGGTCGCACTCTCTCCGATTACAACATT 9297 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || ||||| || || |||| Sbjct 9296 CAAAAGGAGTCAACCCTTCA-CTTG 9273 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || || || |||||||| ||||| || | || || Sbjct 9248 CAAATCTTTGTCAAGACCTTGACTGGTAAGACCATCACCCTTGAGGTTGAGGGTTCTGAT 9189 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| |||||||| ||||| || || ||||| || || || ||| Sbjct 9188 ACCATCGAGAACGTCAAGACCAAGATTCAAGACAAGGAGGGTATCCCACCCGATCAACAA 9129 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || || || || || | || ||| |||| || ||| || Sbjct 9128 CGTCTCATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACCCTTTCCGACTACAACATC 9069 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || ||||| || Sbjct 9068 CAAAAGGAGTCCACTCTCCATCTCGT 9043 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || || |||||| | ||||| || | || || Sbjct 9932 CAAATCTTTGTAAAGACACTGACTGGCAAGACCATCACCTTGGAGGTTGAGGGTTCCGAT 9873 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || || || || || ||||| || ||||| ||| Sbjct 9872 ACCATCGAGAACGTCAAGACCAAGATCCAAGATAAGGAGGGTATCCCACCTGACCAACAA 9813 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || || || ||||| | || ||| |||| || ||| || Sbjct 9812 CGTCTCATCTTTGCTGGTAAGCAACTTGAGGATGGTCGCACCCTTTCCGACTACAACATC 9753 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| || || || || || |||| || Sbjct 9752 CAAAAGGAGTCCACTCTCCA-CTTGGTT 9726 >seq974 Length=18895 Score = 120 bits (132), Expect = 7e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 177944 CACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACA 178003 |||||| || || || ||||| ||||| || ||||||||||||||||||| ||||| Sbjct 5040 CACAGGTAAGACCATTACCCTTGAGGTCGAGGGCTCAGACACCATCGAGAATGTCAAGGC 4981 Query 178004 AAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 ||||| || ||||| || |||||||| || || || ||||| | |||||||| || || Sbjct 4980 CAAGATCCAAGACAAGGAGGGAATCCCCCCCGATCAACAACGTTTGATCTTCGCTGGTAA 4921 Query 178064 ACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 ||| | || || || | || || | || || ||| |||| || || ||||| || || Sbjct 4920 GCAGTTGGAGGACGGTCGTACCCTCTCTGACTACAACATCCAGAAGGAGTCAACTCTCCA 4861 Query 178124 TCTTGT 178129 || || Sbjct 4860 CCTCGT 4855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203524812010108