Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4 129 1e-24 seq6 109 1e-18 seq5 109 1e-18 seq3 109 1e-18 seq2 109 1e-18 seq1 109 1e-18 >seq4 Length=5450249 Score = 129 bits (142), Expect = 1e-24 Identities = 260/381 (68%), Gaps = 6/381 (2%) Strand=Plus/Minus Query 61085 TTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAG 61144 || |||||| ||||| |||||| | ||||| ||||||||||| ||||| ||| |||| | Sbjct 2062606 TTATCAAGCTTCAACCTCTGAATTATATGGTAAAGTTCAAGAGATTCCACAATCAGAGAC 2062547 Query 61145 GACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGAT--T 61202 || || || ||||| ||| || || | ||| ||||| | ||| || || ||||| | Sbjct 2062546 CACACCATTCTATCCACGTTCACCATACGCTGTCGCAAAGCAATATGCCTATTGGATCGT 2062487 Query 61203 TGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCAC 61262 ||| ||| || || ||| | || | |||| || |||||| || | |||||||| Sbjct 2062486 TGT--AAACTATCGTGAGGCTTACGATATGTATGCATGTAATGGTATCTTATTCAATCAT 2062429 Query 61263 GAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAAT 61322 || || |||||||| ||||| ||| | || || || ||||| | Sbjct 2062428 GAATCACCACGTAGAGGTCCAACTTTTGTAACTAGAAAGATCACTCGTTTCGTTGCTGGT 2062369 Query 61323 ATTTTTAACGGTGTCGA-AAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTG 61381 ||| ||| || |||| | | || | || || || || ||||| | ||||| Sbjct 2062368 ATTGCATGTGGTAGAGATGAAATTC-TCTACTTGGGTAATATCAACGCTAAACGTGATTG 2062310 Query 61382 GGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGA 61441 ||| | || |||||| | || || |||||||| ||||| |||||||| | ||||| Sbjct 2062309 GGGTCACGCTAGAGATTACGTTGAAGCAATGTGGTTAATGTTACAACAAGAGAAGCCAGA 2062250 Query 61442 TGACTACGTTATTGCGACTGG 61462 || | ||||||||| ||||| Sbjct 2062249 AGATTTCGTTATTGCCACTGG 2062229 >seq6 Length=3602379 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 2954606 TGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 2954547 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 2954546 CCCCCCGTTGGGC 2954534 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 2957069 TGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 2957010 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 2957009 CCCCCCGTTGGGC 2956997 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 2985395 TGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 2985454 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 2985455 CCCCCCGTTGGGC 2985467 >seq5 Length=5125352 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 4947783 TGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 4947724 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 4947723 CCCCCCGTTGGGC 4947711 >seq3 Length=6357299 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 4266690 TGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 4266749 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 4266750 CCCCCCGTTGGGC 4266762 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 5652918 TGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 5652977 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 5652978 CCCCCCGTTGGGC 5652990 >seq2 Length=8484197 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 5400845 TGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 5400786 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 5400785 CCCCCCGTTGGGC 5400773 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||| |||||||||||||||||||| || ||||||| || ||||||| |||||||| Sbjct 4989865 TTGCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGGGGTTCGA 4989806 Query 165768 GCCCCACGATGGGC 165781 ||||| | ||||| Sbjct 4989805 GCCCCCCTTTGGGC 4989792 >seq1 Length=4923596 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 1759766 TGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 1759825 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 1759826 CCCCCCGTTGGGC 1759838 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 2560579 TGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 2560520 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 2560519 CCCCCCGTTGGGC 2560507 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 2697089 TGCCCGGCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGGGGGTTCGAG 2697148 Query 165769 CCCCACGATGGGC 165781 |||| || ||||| Sbjct 2697149 CCCCCCGTTGGGC 2697161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823444311830