Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2 109 6e-19 >seq2 Length=8484197 Score = 109 bits (120), Expect = 6e-19 Identities = 199/289 (69%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| ||||| || ||||||| |||||||| | || | ||| || ||||| ||| Sbjct 2356846 AGACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTT 2356787 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAA 16316 || ||| ||||| |||| || || ||||| ||||| | | ||| | | | |||| Sbjct 2356786 AAACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAA 2356727 Query 16317 AGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTAT 16376 | ||||||||||||| | |||||| || | || ||||| || | | |||| || Sbjct 2356726 A--ATATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAA---TGAATCTGAAT 2356672 Query 16377 TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436 | |||||| | | ||||||| || || | ||| ||||| || ||||| || | Sbjct 2356671 CATTTATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTG 2356612 Query 16437 CCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAAT 16485 | ||||| ||||| ||||| || |||| | ||||| || ||||| Sbjct 2356611 CATTAAATAATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAAT 2356563 Score = 109 bits (120), Expect = 6e-19 Identities = 199/289 (69%), Gaps = 7/289 (2%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| ||||| || ||||||| |||||||| | || | ||| || ||||| ||| Sbjct 3674940 AGACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTT 3674999 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAA 16316 || ||| ||||| |||| || || ||||| ||||| | | ||| | | | |||| Sbjct 3675000 AAACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAA 3675059 Query 16317 AGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTAT 16376 | ||||||||||||| | |||||| || | || ||||| || | | |||| || Sbjct 3675060 A--ATATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAA---TGAATCTGAAT 3675114 Query 16377 TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436 | |||||| | | ||||||| || || | ||| ||||| || ||||| || | Sbjct 3675115 CATTTATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTG 3675174 Query 16437 CCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAAT 16485 | ||||| ||||| ||||| || |||| | ||||| || ||||| Sbjct 3675175 CATTAAATAATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAAT 3675223 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/135 (76%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 |||| || ||||| || || || || || ||||| |||||||| |||| || || | | Sbjct 2356421 TTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAA 2356362 Query 16560 TTTGTACTTC-CACGTAAA-ATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 |||||||||| || |||| | ||| || ||||| ||||| || ||||| ||| ||| Sbjct 2356361 TTTGTACTTCAGACATAAATCTAGTT--GCAAGGTTTTCATTTACAATACCATCAGATGC 2356304 Query 16618 AGCAAAAAACGCCAA 16632 ||||||||| ||||| Sbjct 2356303 AGCAAAAAATGCCAA 2356289 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/135 (76%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 |||| || ||||| || || || || || ||||| |||||||| |||| || || | | Sbjct 3675365 TTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAA 3675424 Query 16560 TTTGTACTTC-CACGTAAA-ATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 |||||||||| || |||| | ||| || ||||| ||||| || ||||| ||| ||| Sbjct 3675425 TTTGTACTTCAGACATAAATCTAGTT--GCAAGGTTTTCATTTACAATACCATCAGATGC 3675482 Query 16618 AGCAAAAAACGCCAA 16632 ||||||||| ||||| Sbjct 3675483 AGCAAAAAATGCCAA 3675497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414137900120