Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4 174 2e-38 seq2 136 5e-27 seq6 91.5 2e-13 seq5 86.0 7e-12 >seq4 Length=5450249 Score = 174 bits (192), Expect = 2e-38 Identities = 604/930 (65%), Gaps = 27/930 (3%) Strand=Plus/Minus Query 53704 TGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 53763 ||| ||||| || |||||||||||||| | |||| | | ||||| || ||||| Sbjct 1505013 TGCTATAGAGGCAAGATTACAAACGGCGATTTCATCTGGTGATGTGTATTGAATGATCTC 1504954 Query 53764 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 53823 || ||||||||||||| | ||||| |||||||| | |||||| || ||||| Sbjct 1504953 GGTACAAAGATTACTACTACTAATGGTACCTAAATTCTTTTGATTGGATTTAGCATTACA 1504894 Query 53824 CGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTT 53883 |||||||| || | ||||||||| ||||||||||||| || || || ||||| || Sbjct 1504893 GGCATCCTTGTACAAAATGAATGGAGTACCAGTTTCAACTTGAGACTCCATAATGGCGAA 1504834 Query 53884 CCAGACGACACGAGCCTTTATTATAGATTT------GT-ATCTCTT--TTC-TCTTTCGT 53933 ||| | | |||| || || | | | | || | | || ||| | |||| Sbjct 1504833 CCAAAGTTCTTGAGCTTTAATGACACGTCTTGGGAGGTCAGGTGTTGCTTCGTATTTCAA 1504774 Query 53934 ATAGTGTATACAATCGTTCAAACTC-GTCTCCCCAAACATTGTCCAAT-CCAGGACATTC 53991 |||| | || || |||| ||| | | | || ||| || || ||| Sbjct 1504773 ATAGAGAGCACGAT-GTTC---CTCTGAGTG-----AGTTTCAGCAAGACCTGGTGCTTC 1504723 Query 53992 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 54051 || ||||| | | | ||| || || | | | || |||| |||||| | |||| Sbjct 1504722 ATTTGGACAAAAGAGGGCCCAATCGCCATTTTGTTCGACACGTTCCATAAAAATATCACT 1504663 Query 54052 AATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 54110 || ||||||||| ||| ||||||||||| | ||| || || || || || || || | Sbjct 1504662 AACCCAAAGAGC-ATAGAATAGATCTCTAGCTCTCATCTCTTCCTTACCAGTGTTTTTCT 1504604 Query 54111 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTC 54170 | ||||| | || | | | ||||| ||||| ||||||||||| | || | | | Sbjct 1504603 TTAGATCAATAAATTCAAAGACATCAGCGTGCCATGGTTCCAAGTAAACGGCAAAGGCAC 1504544 Query 54171 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 54230 | | ||| || || ||||| | ||| | ||| || | ||| |||| | | || Sbjct 1504543 CCTTTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGAAAACACGAAGCA 1504484 Query 54231 TTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAA 54290 |||| | | ||||||| || ||||||||| || ||||| ||| | ||||||| Sbjct 1504483 TTGGCACCAAACCATTGCTTGTACCATTGGTACCACGAATATAACTTTGAGCAGCACGAA 1504424 Query 54291 TATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 54350 | ||| || || | ||| || || || || | || || || | ||| ||| |||| | Sbjct 1504423 TCTTATGAACTGCAATACCAATACCACCGGCACTCTTTGAAATGAGTGCACATTGTTTCA 1504364 Query 54351 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA 54410 | || ||||| || || || || ||| ||| |||| | || | ||||| |||| Sbjct 1504363 AAGTGTCATAAATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACAAGATGACA 1504304 Query 54411 TT--TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 54468 || |||||| | || || || || |||| || || | || || || ||| |||| Sbjct 1504303 TTTGTGGTGATG--GTGTACCTGCGTTGAATAGAGTTGGTGTGGCATGAGTGAACAATTT 1504246 Query 54469 TTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTAC 54528 ||||| | | ||||| || | ||| || || || | || ||| || || | Sbjct 1504245 CTCAGACAAACGTTTGTAGGTGTTGATGGCAGATTCGAGGTCTTCGCCATGGATACCAAT 1504186 Query 54529 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAA 54588 | ||||||||| |||||||| || || | || || || || || || | | Sbjct 1504185 GGAGACACGCATCAACATGTGTTGTGGACGCTCGACAATTTTACCATTGATACGATGAAG 1504126 Query 54589 GTAGGATTTTTCCAAAGTTTTAAAACCAAA 54618 ||||| |||||| ||||| || ||||| Sbjct 1504125 ATAGGAACGTTCCAATGTTTTGAATCCAAA 1504096 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||| | | | | || || ||||| ||||||||||| || || |||| | Sbjct 1505942 GTGAATTGAATTGCATCAGCGGCAGGACGAGTACGAAGATAGTACATACCAGTCTTTAAA 1505883 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || ||||| ||| |||||||| || ||||| | | | | || || || || Sbjct 1505882 CCTTTCTTCCATGAGTAGAAATGCATTGAGGTGAGTTTAGCAAAGGTTGGTTCAGCAATG 1505823 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 | ||| | | |||||||||||||||||| || || | || |||||||| | ||| Sbjct 1505822 AAAACATTGAAACTTTGACTTTGATCGATGAAAGCACCACGATCAGCAGCCATATCGATG 1505763 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 53022 | || |||| | |||||||||| |||||||| Sbjct 1505762 AGAGTTCTTTGACGGATTTCCCAAACTGTTTTATA 1505728 >seq2 Length=8484197 Score = 136 bits (150), Expect = 5e-27 Identities = 210/295 (71%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 |||||||||||| || |||| ||| ||||| | ||||||||| || ||||| || | Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || |||||| || | |||||| | ||||||||| || ||| |||| || || Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 2356725 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG--TCATGT 24311 || || || ||||| ||||| |||| | | |||| | || | ||| |||| | Sbjct 2356724 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGC--AAATGAATCTGAATCATTT 2356667 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 ||||| || ||||| || ||||||||||| | ||| || ||||| || || |||||| Sbjct 2356666 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 2356607 Query 24372 AAGAGATAGtttttttCATTAC-TATCTTTAACATATGTATCAATCAAAAGACTA 24425 || | || | ||| || | ||||||||| ||| || ||||| ||||||||| Sbjct 2356606 AATA-ATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 2356553 Score = 136 bits (150), Expect = 5e-27 Identities = 210/295 (71%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 |||||||||||| || |||| ||| ||||| | ||||||||| || ||||| || | Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || |||||| || | |||||| | ||||||||| || ||| |||| || || Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 3675061 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG--TCATGT 24311 || || || ||||| ||||| |||| | | |||| | || | ||| |||| | Sbjct 3675062 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGC--AAATGAATCTGAATCATTT 3675119 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 ||||| || ||||| || ||||||||||| | ||| || ||||| || || |||||| Sbjct 3675120 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 3675179 Query 24372 AAGAGATAGtttttttCATTAC-TATCTTTAACATATGTATCAATCAAAAGACTA 24425 || | || | ||| || | ||||||||| ||| || ||||| ||||||||| Sbjct 3675180 AATA-ATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 3675233 Score = 107 bits (118), Expect = 2e-18 Identities = 114/148 (77%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 ||||| |||| ||||| || |||||||| || |||||||| || ||||||||||| || Sbjct 2356428 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 2356369 Query 24483 TCGGTAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 || | ||| |||||||| | ||| ||||| ||| | |||||||| || || || || Sbjct 2356368 TCTGGAATTTGTACTTC-AGACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATC 2356310 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGT 24569 | || |||||||| ||||| |||||| Sbjct 2356309 AGATGCAGCAAAAAATGCCAAAACATGT 2356282 Score = 107 bits (118), Expect = 2e-18 Identities = 114/148 (77%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 ||||| |||| ||||| || |||||||| || |||||||| || ||||||||||| || Sbjct 3675358 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 3675417 Query 24483 TCGGTAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 || | ||| |||||||| | ||| ||||| ||| | |||||||| || || || || Sbjct 3675418 TCTGGAATTTGTACTTC-AGACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATC 3675476 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGT 24569 | || |||||||| ||||| |||||| Sbjct 3675477 AGATGCAGCAAAAAATGCCAAAACATGT 3675504 >seq6 Length=3602379 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 24306 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 24365 |||| |||||| ||| |||||| || ||||||||||| ||||| || ||||| || || Sbjct 705808 TCATTTATCCATTTTAAAGCCCATTCTGCCTTCTTTTTAACACATGGGATTGTTTCAATT 705749 Query 24366 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 24425 |||||||| || | | ||| ||| |||| |||| | | || ||||| ||||||||| Sbjct 705748 GCATTAAAAAGTTTATCTTTAATATTTTTATCCTTAATACAAGTTTCAATTAAAAGACTA 705689 >seq5 Length=5125352 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 71765 GTGATAGGTATTGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG 71824 || || |||||||||||||| || || || |||||| |||| |||| |||| || Sbjct 2508691 GTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGACTTG 2508632 Query 71825 GCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTCGATGGGACATTTCAACGTAAACCG 71884 ||||| |||| |||| |||||| | |||||||| ||||| || || ||| | ||||| Sbjct 2508631 GCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAAGAAAACCA 2508572 Query 71885 TT-TAATAATATCTTGGATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCAGT 71943 || ||| | || | ||| | | || ||||| | ||| ||||||| || Sbjct 2508571 TTCCAATCA-GTCATTGATTTAGTATCAAAGGCTGAATATATTACAAAGTTAACTGCCGT 2508513 Query 71944 GTGTATGAAATGCTTTAAGGAGGCGTCCTTTTCTAAACG 71982 |||||| |||| || || || ||||||| ||||| Sbjct 2508512 TTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACG 2508474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721295717680