Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq3 95.1 1e-14 >seq5 Length=5125352 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| || |||||||||||| | || ||||||| | Sbjct 2812114 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTCGAAGGTAGT 2812173 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| |||| | ||||| | |||||||| || || || | || || Sbjct 2812174 GATAACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2812233 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||| | ||| || ||||| | || || | || || ||| || |||||| Sbjct 2812234 CAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAAC 2812293 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || || |||| || ||| |||| Sbjct 2812294 ATCCAAAAAGAATCCACTCTCCATTTAGT 2812322 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || |||||||| ||||| || |||||||||||| | || || |||| | Sbjct 2811430 ATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACCTTAGAGGTTGAAGGTAGT 2811489 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | || | ||||||| |||||||| || ||||| | || || Sbjct 2811490 GATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAA 2811549 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | || | ||| || ||||| | || || | || || ||| ||||||||| Sbjct 2811550 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAAC 2811609 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || || ||||| |||| || || Sbjct 2811610 ATTCAAAAGGAATCCACTCTCCA 2811632 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| || ||||||||||| | || || |||| | Sbjct 2811202 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACATTGGAAGTTGAAGGTAGT 2811261 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| ||||||| |||||||| || || || | || || Sbjct 2811262 GACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 2811321 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | |||| || || ||||| | || || | || || || || |||||| Sbjct 2811322 CAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 2811381 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || ||||| |||| || ||| |||| Sbjct 2811382 ATTCAAAAGGAATCCACTCTCCATTTAGT 2811410 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| || || ||||||||| | || || |||| | Sbjct 2811886 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAGACCATCACCTTAGAGGTTGAAGGTAGT 2811945 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| |||| | ||||| | |||||||| || ||||| | || || Sbjct 2811946 GATAACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 2812005 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | || | ||| || ||||| | || || | || || ||| ||||||||| Sbjct 2812006 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAAC 2812065 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 ||||| || || |||| || ||| |||| || Sbjct 2812066 ATCCAAAAAGAATCCACTCTCCATTTAGTTTT 2812097 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || |||||||| | || || ||||| |||||| | || ||||||| | Sbjct 2811658 ATGCAAATCTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCT 2811717 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | || | ||||| | |||||||| || ||||| | || || Sbjct 2811718 GACAACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 2811777 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | || | ||| || ||||| | || || | || || ||| ||||||||| Sbjct 2811778 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAAC 2811837 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 || || || || |||| || ||| |||| || Sbjct 2811838 ATTCAAAAAGAATCCACTCTCCATTTAGTTTT 2811869 >seq3 Length=6357299 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || ||||||||||| | || || |||| | Sbjct 2331837 ATGCAAATTTTCGTTAAAACTCTCACTGGTAAAACCATCACATTAGAAGTTGAAGGTTCT 2331896 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | || | ||||| | || ||||| || ||||| | ||||| Sbjct 2331897 GATAACATCGAGAATGTTAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCAA 2331956 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | ||| || ||||| | || || | || || ||| ||||||||| Sbjct 2331957 CAACGTCTTATTTTCGCAGGTAAACAATTAGAAGATGGTCGTACTCTCTCAGACTACAAC 2332016 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 || || ||||| | || || ||| |||| || Sbjct 2332017 ATTCAAAAGGAATCAACTCTTCATTTAGTATT 2332048 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| ||||| | || || ||||||||||| |||| || |||| Sbjct 3722784 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 3722725 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | ||||| |||| | || |||| |||||||| || ||||| | || Sbjct 3722724 TCAGACAACATCGAAAACG-TCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGA 3722666 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| || |||| || || ||||| | || || | || || | ||| || Sbjct 3722665 TCAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTA 3722606 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 |||||||| ||||| | || || || |||| || Sbjct 3722605 TAACATCCAAAAGGAATCAACCCTCCACTTAGTTTT 3722570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218935950160