Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3 104 3e-17 seq5 89.7 6e-13 seq6 84.2 3e-11 >seq3 Length=6357299 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| |||||||| | | || ||||| | ||| ||||||||||| |||||||||| Sbjct 5641138 TCCACCTCTTAATCTGAGAACTAAATGGAGTGTTGATTCCTTTTGAATGTTGTAATCAGA 5641079 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || | || |||| || ||||| ||||| ||||| || || || || | || Sbjct 5641078 AAGAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGG 5641019 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | || |||| | ||| |||||| ||| | || | | |||| || ||| | Sbjct 5641018 GATACCTTCTTTGT-CTTGAATTTTTGTTTTTACATTCTCAATGTTGTCACTACCTTCAA 5640960 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | |||| || |||||||| || || || || |||||||| |||||||| Sbjct 5640959 CTTCGAGTGTAATGGTTTTACCAGTGAGAGTTTTTACAAAAATTTGCAT 5640911 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| | | ||||| || | || || ||||| ||||||||||||| Sbjct 5640453 CCACCTCTTAATCTGAGGACCAAGTGGAGAGTTGATTCTTTTTGGATATTGTAATCAGAG 5640394 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || |||| || ||||||||||| ||||| || || || || | || Sbjct 5640393 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGA 5640334 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||| | ||| | |||| ||| | || | | |||| || ||| || Sbjct 5640333 ATAC-CTTCTTTATCTTGAATCTTTGTTTTTACATTCTCAATGTTGTCACTACCTTCAAC 5640275 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || || || || || || |||||||||||||||||||| Sbjct 5640274 TTCGAGTGTAATAGTCTTACCGGTGAGGGTCTTTACAAAGATTTGCAT 5640227 >seq5 Length=5125352 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| | | ||||| || | ||| ||||||||||| ||||| |||| Sbjct 2811656 CCACCTCTTAATCTGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAG 2811597 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || |||| || ||||||||||| || | || || || || | || Sbjct 2811596 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGG 2811537 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCAC 43135 | | || |||| | ||| |||| | || | | | || | | || || ||| || Sbjct 2811536 ATACCTTCTTTGT-CTTGAATTTTAGCTTTAACATTTTCAATGTTATCACTACCTTCAAC 2811478 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| || || || || ||||||||||||||||| Sbjct 2811477 CTCTAAGGTGATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCAT 2811430 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| | | || ||||| | ||| || ||||| || |||||||||| Sbjct 2812340 CCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAG 2812281 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || |||| || ||||||||||| ||||| || || || || | || Sbjct 2812280 AGAGTACGGCCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGA 2812221 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | || ||||| |||||| ||||| | | | | || || ||| || Sbjct 2812220 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAATGTTATCACTACCTTCGACT 2812161 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| || || || || || |||||||||||||| Sbjct 2812160 TCCAAGGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 2812114 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| | | || ||||| | ||| ||||||||||| |||||||||| Sbjct 2812796 CCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 2812737 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || |||| || ||||||||||| ||||| || || || || | || Sbjct 2812736 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGA 2812677 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | || ||||| |||||| ||| | | | | | || || ||| || Sbjct 2812676 ATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGACT 2812617 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| ||||| || |||| || || |||||||||||||| Sbjct 2812616 TCCAAGGTGATAGTTTTACCTGTTAAAGTTTTAACAAAGATTTGCAT 2812570 >seq6 Length=3602379 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| | || || ||||| | || || ||||||||||||||||| | Sbjct 961717 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTGTAATCTGAA 961658 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || |||| || |||||||| || ||||| || || || || | || Sbjct 961657 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGA 961598 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCAC 43135 | | || ||| | ||| |||| | || | | | || | ||||||| ||| || Sbjct 961597 ATAC-CTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTGTCGCTACCTTCGAC 961539 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| ||||| || || || || || ||||| |||||||| Sbjct 961538 TTCTAATGTGATAGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 961491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817306943480