Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 138 1e-27 >seq2 Length=8484197 Score = 138 bits (152), Expect = 1e-27 Identities = 210/296 (71%), Gaps = 5/296 (2%) Strand=Plus/Minus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||| || ||||||||||| || |||||||| | ||||| || ||||||||||| | Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 |||| |||||| |||| ||||| | ||||||||| | ||| ||| || || Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 2356725 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 |||||| |||||||| |||||||||||||| || || | | | || | | | Sbjct 2356724 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAA---TGAATCTGAATCATT 2356668 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 ||||||| || ||||| | ||| || | ||||| ||| || | || |||||||| Sbjct 2356667 TATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATT 2356608 Query 16474 AAATAAATAAtttttttCTTTGC-TATCTAAAATATAAGTATCTATTAGTAAACTA 16528 |||||| | | | ||| ||||| ||||| ||||||||| || |||| | |||| Sbjct 2356607 AAATAATTTA-TCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 2356553 Score = 138 bits (152), Expect = 1e-27 Identities = 210/296 (71%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||| || ||||||||||| || |||||||| | ||||| || ||||||||||| | Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 |||| |||||| |||| ||||| | ||||||||| | ||| ||| || || Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 3675061 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 |||||| |||||||| |||||||||||||| || || | | | || | | | Sbjct 3675062 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAA---TGAATCTGAATCATT 3675118 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 ||||||| || ||||| | ||| || | ||||| ||| || | || |||||||| Sbjct 3675119 TATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATT 3675178 Query 16474 AAATAAATAAtttttttCTTTGC-TATCTAAAATATAAGTATCTATTAGTAAACTA 16528 |||||| | | | ||| ||||| ||||| ||||||||| || |||| | |||| Sbjct 3675179 AAATAATTTA-TCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 3675233 Score = 98.7 bits (108), Expect = 9e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 ||||| |||| ||||| ||||| || ||||| || ||||||||||| || ||||| ||| Sbjct 2356428 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 2356369 Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645 || | |||||||||||||| ||| || ||| | |||||| || || || ||||| Sbjct 2356368 TCTGGAATTTGTACTTCAGACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATCA 2356309 Query 16646 CTAGCTGCAAAAAACGC 16662 || |||||||| || Sbjct 2356308 GATGCAGCAAAAAATGC 2356292 Score = 98.7 bits (108), Expect = 9e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 ||||| |||| ||||| ||||| || ||||| || ||||||||||| || ||||| ||| Sbjct 3675358 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 3675417 Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645 || | |||||||||||||| ||| || ||| | |||||| || || || ||||| Sbjct 3675418 TCTGGAATTTGTACTTCAGACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATCA 3675477 Query 16646 CTAGCTGCAAAAAACGC 16662 || |||||||| || Sbjct 3675478 GATGCAGCAAAAAATGC 3675494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511762962600