Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq3 95.1 1e-14 >seq5 Length=5125352 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | |||||||| || ||| ||||| |||||||||||||| Sbjct 2811656 CCACCTCTTAATCTGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAG 2811597 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || | |||||| || ||||| || || | ||||| || || || Sbjct 2811596 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGG 2811537 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| |||||| ||||| | | | | || | ||| || ||| Sbjct 2811536 ATACCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCAATGTTATCACTACCTTCAACC 2811477 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || || || || || ||||| || |||||||||||||| Sbjct 2811476 TCTAAGGTGATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCAT 2811430 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| |||||||| || || || || ||| || || |||||||||||||| Sbjct 2811884 CCACCTCTTAATCTTAAAACTAAATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAG 2811825 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || | |||||| || ||||| || || | ||||| || || || Sbjct 2811824 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGG 2811765 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| ||||| ||||| | | | |||| ||| || || Sbjct 2811764 ATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTTTCAATGTTGTCAGAACCTTCGACT 2811705 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || || || || |||| || || |||||||||||||| Sbjct 2811704 TCCAAGGTGATAGTTTTACCAGTCAAGGTTTTTACAAAGATTTGCAT 2811658 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| |||||||| || || || || ||| || || || ||||||||||| Sbjct 2812112 CCACCTCTTAATCTTAAAACTAAATGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAG 2812053 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || | |||||| || ||||| || || | ||||| || || || Sbjct 2812052 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGG 2811993 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| ||||| || || | | | | || | ||| || ||| Sbjct 2811992 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAATGTTATCACTACCTTCAACC 2811933 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| || || ||||| || ||||| |||||||| Sbjct 2811932 TCTAAGGTGATGGTCTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 2811886 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | || || || || ||| ||||| ||||||||||| || Sbjct 2811428 CCACCTCTTAATCTAAGAACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAA 2811369 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || | |||||| || || || || || | ||||| || || || Sbjct 2811368 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGTGGA 2811309 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| |||||| ||| || | | | |||| | ||| || || Sbjct 2811308 ATACCTTCTTTGTCTTGAATTTTAGCCTTGACATTTTCAATGTTGTCACTACCTTCAACT 2811249 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || || || || ||||| || ||||| |||||||| Sbjct 2811248 TCCAATGTGATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 2811202 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | || || || || ||| ||||| ||||||||||| || Sbjct 2812796 CCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 2812737 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || | |||||| || ||||| || | || ||||| || || || Sbjct 2812736 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGA 2812677 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| ||||| ||||| | | | | || | ||| || || Sbjct 2812676 ATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGACT 2812617 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || || || || || | ||| || |||||||||||||| Sbjct 2812616 TCCAAGGTGATAGTTTTACCTGTTAAAGTTTTAACAAAGATTTGCAT 2812570 >seq3 Length=6357299 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | || || || || || ||||| ||||||||||| || Sbjct 5641137 CCACCTCTTAATCTGAGAACTAAATGGAGTGTTGATTCCTTTTGAATGTTGTAATCAGAA 5641078 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || | |||||| |||||||| || | || ||||| || || || Sbjct 5641077 AGAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGG 5641018 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| ||||||| || || | | | | |||| | ||| || || Sbjct 5641017 ATACCTTCTTTGTCTTGAATTTTTGTTTTTACATTCTCAATGTTGTCACTACCTTCAACT 5640958 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| || || || || ||||| || ||||| |||||||| Sbjct 5640957 TCGAGTGTAATGGTTTTACCAGTGAGAGTTTTTACAAAAATTTGCAT 5640911 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | || || || || ||| ||||| ||||||||||| || Sbjct 5640909 CCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 5640850 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || |||| |||||| |||||||| || | || ||||| || || || Sbjct 5640849 AGAGTACGACCATCCTCCAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGA 5640790 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| ||||| ||||| | | | | | || ||| || || Sbjct 5640789 ATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTCTCAATGTTATCAGAACCTTCAACT 5640730 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| ||||| || || || || || ||||| |||||||| Sbjct 5640729 TCGAGTGTAATAGTCTTACCAGTGAGGGTTTTGACAAAAATTTGCAT 5640683 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||||||||| || || || || ||||| |||||||||||||| Sbjct 2332063 CCACCTCTTAATCTTAATACTAAATGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGAG 2332004 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || | |||||| || ||||| || | || |||||||| || || Sbjct 2332003 AGAGTACGACCATCTTCTAATTGTTTACCTGCGAAAATAAGACGTTGTTGGTCTGGTGGG 2331944 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || || || ||||| ||||| | | | | | || ||| || || Sbjct 2331943 ATACCTTCTTTATCTTGGATTTTAGCTTTAACATTCTCGATGTTATCAGAACCTTCAACT 2331884 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || || || || || ||||| || || || |||||||| Sbjct 2331883 TCTAATGTGATGGTTTTACCAGTGAGAGTTTTAACGAAAATTTGCAT 2331837 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||| | |||||||| || || || || || || ||||| || Sbjct 5640453 CCACCTCTTAATCTGAGGACCAAGTGGAGAGTTGATTCTTTTTGGATATTGTAATCAGAG 5640394 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || | |||||| || ||||| || | || ||||| || || || Sbjct 5640393 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGA 5640334 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || || || ||| ||| || || | | | | |||| | ||| || || Sbjct 5640333 ATACCTTCTTTATCTTGAATCTTTGTTTTTACATTCTCAATGTTGTCACTACCTTCAACT 5640274 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| ||||| || || || ||||| |||||||||||||| Sbjct 5640273 TCGAGTGTAATAGTCTTACCGGTGAGGGTCTTTACAAAGATTTGCAT 5640227 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| |||||||| || ||||| || || ||||| |||||||| ||||| Sbjct 5879007 CCACCTCTTAATCTTAAAACTAAGTGAAGAGTTGATTCCTTTTGAATGTTATAGTCAGAG 5879066 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || |||| |||||| || || || || | || ||||| || || || Sbjct 5879067 AGAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGA 5879126 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || || || |||||| ||| || | | | | || ||| || || Sbjct 5879127 ATACCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATGTTATCAGAACCTTCAACT 5879186 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || || || || || ||||| || |||||||||||||| Sbjct 5879187 TCTAAAGTGATTGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 5879233 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| ||||||||||||||||| || ||| ||||| |||||||| ||||| Sbjct 5879463 CCACCTCTTAATCTTAATACCAAGTGGAGAGTGGATTCCTTTTGAATGTTATAGTCAGAA 5879522 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || | |||||| || ||||| || || | |||||||| || || Sbjct 5879523 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGA 5879582 Query 45230 ACACCCTCCTTGTC 45243 | ||| || || || Sbjct 5879583 ATACCTTCTTTATC 5879596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075002585861