Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2 140 3e-28 seq5 93.3 4e-14 seq6 82.4 7e-11 >seq2 Length=8484197 Score = 140 bits (154), Expect = 3e-28 Identities = 179/246 (73%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| || ||||||||||| | || || || | ||| | ||| |||||||||||||| Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 ||| |||| || |||| ||||| ||||||||||||| | || ||| || || Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 2356725 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14382 ||| ||||||||||| ||||| || | || |||||| |||| || || | || Sbjct 2356724 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAATGAATCTGAATCATT--- 2356668 Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||||| || |||||||| | || ||||||||| | ||||||||||| ||||| Sbjct 2356667 TATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATT 2356608 Query 14443 AAATAA 14448 |||||| Sbjct 2356607 AAATAA 2356602 Score = 140 bits (154), Expect = 3e-28 Identities = 179/246 (73%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| || ||||||||||| | || || || | ||| | ||| |||||||||||||| Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 ||| |||| || |||| ||||| ||||||||||||| | || ||| || || Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 3675061 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14382 ||| ||||||||||| ||||| || | || |||||| |||| || || | || Sbjct 3675062 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAATGAATCTGAATCATT--- 3675118 Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||||| || |||||||| | || ||||||||| | ||||||||||| ||||| Sbjct 3675119 TATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATT 3675178 Query 14443 AAATAA 14448 |||||| Sbjct 3675179 AAATAA 3675184 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 7/193 (4%) Strand=Plus/Minus Query 14448 AATGTTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTA---AGCTATACA 14501 ||| | | || |||||| || ||| | || ||| ||| | ||| || | ||||| Sbjct 2356480 AATCTACTTTTTCTTTATTAAAACTTTATATATATATATGA-TAAATATTTACCTATAAG 2356422 Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14561 ||||||| ||||| ||||| || || || ||||||||||| |||||||| ||||||| Sbjct 2356421 TTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAA 2356362 Query 14562 ATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 |||||| || || |||||| || | |||||||| || ||||||||| || | Sbjct 2356361 TTTGTACTTCAGACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATCAGATGCAG 2356302 Query 14622 CAAAAAATGCCAA 14634 ||||||||||||| Sbjct 2356301 CAAAAAATGCCAA 2356289 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 7/193 (4%) Strand=Plus/Plus Query 14448 AATGTTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTA---AGCTATACA 14501 ||| | | || |||||| || ||| | || ||| ||| | ||| || | ||||| Sbjct 3675306 AATCTACTTTTTCTTTATTAAAACTTTATATATATATATGA-TAAATATTTACCTATAAG 3675364 Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14561 ||||||| ||||| ||||| || || || ||||||||||| |||||||| ||||||| Sbjct 3675365 TTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAA 3675424 Query 14562 ATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 |||||| || || |||||| || | |||||||| || ||||||||| || | Sbjct 3675425 TTTGTACTTCAGACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATCAGATGCAG 3675484 Query 14622 CAAAAAATGCCAA 14634 ||||||||||||| Sbjct 3675485 CAAAAAATGCCAA 3675497 >seq5 Length=5125352 Score = 93.3 bits (102), Expect = 4e-14 Identities = 190/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 57031 ATAGGTATAGATGAAGGCCAATTCTTTAAAGATATTGTATCTTTTTCTGAAAATATGGCA 57090 || ||||| |||||||||||||| || ||| ||||| ||| |||| | ||||| Sbjct 2508688 ATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGACTTGGCA 2508629 Query 57091 AATATGGGAAAGATAATTATAATAGCTGCACTAGATAGCACGTTTCAACGAAAAGAATT- 57149 ||| || || | ||||||| || ||||||||| | || || ||| ||||| ||| Sbjct 2508628 AATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAAGAAAACCATTC 2508569 Query 57150 TAATGATATATTGAAATTAATACCGTTATCTGAAAAAGTAACAAAATTAAACGCTGTATG 57209 ||| | |||| | ||| || | ||||| | | ||||| |||| || || || Sbjct 2508568 CAATCAGTCATTG-ATTTAGTATCAAAGGCTGAATATATTACAAAGTTAACTGCCGTTTG 2508510 Query 57210 TATGGAATGTTATAAAGACGCCGCATTTTCTAAGAGGATC-ACTAAAGAAAAGGAAATAG 57268 ||||| || || || || ||||| ||||| || | ||| | |||| | || || | Sbjct 2508509 TATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTATCGTCGAAAG-TGATGATATCG 2508451 Query 57269 AACTCATCGGGGGTAAGGAAAAATATAAATCTGTTTG 57305 || | || || |||| || ||||||| || ||||| Sbjct 2508450 AATTAATTGGTGGTATAGATAAATATATTTCCGTTTG 2508414 >seq6 Length=3602379 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/208 (68%), Gaps = 9/208 (4%) Strand=Plus/Minus Query 14238 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 14297 |||| | ||| |||||||||||||| ||| ||||||| || ||||||||| || | Sbjct 705939 TAATCAATTCATTTGAAAATGTTAAACCTTGCATCAAAGATCTCTTTTTTAACAAACTGA 705880 Query 14298 TTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTT 14357 || | || ||| || ||||| | |||| ||| | | |||| || |||| Sbjct 705879 TTATACGAAAACTTCCACTGAAAAATATACTTTCAAATGCTACGAGTGCTACTAGACGTT 705820 Query 14358 CTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14417 | |||| ||| | ||| ||||||||| ||||||||| | || ||||||| Sbjct 705819 TTTCAAATGATTCATTT---------ATCCATTTTAAAGCCCATTCTGCCTTCTTTTTAA 705769 Query 14418 TAAAATCCATTGTTTCAATAGCATTAAA 14445 | | ||||||||||| |||||||| Sbjct 705768 CACATGGGATTGTTTCAATTGCATTAAA 705741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345352797880