Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq5 105 5e-18 seq6 100 2e-16 seq3 100 2e-16 >seq5 Length=5125352 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || |||||| || | || || || ||||| |||||||||||||| || | Sbjct 2811428 CCACCTCTTAATCTAAGAACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAA 2811369 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| |||||||| || ||| |||| | |||||||||||| || Sbjct 2811368 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGTGGA 2811309 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || ||||| |||||| | | ||| |||||| || | Sbjct 2811308 ATACCTTCTTTGTCTTGAATTTTAGCCTTGACATTTTCAATGTTGTCACTACCTTCAACT 2811249 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331 || | |||||| |||| || || | ||||| |||||||||||||| |||| Sbjct 2811248 TCCAATGTGATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCATAATTAA 2811196 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||||||||||||||||||||| | | || || |||||| |||||| Sbjct 2811860 TGGAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGAGTACGACCATCTTCTAATTGT 2811801 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || | || | |||||||||||| || | ||||| || || |||| | Sbjct 2811800 TTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTT-T 2811742 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | ||| ||||| ||| ||| | |||||| |||| || || Sbjct 2811741 GGCTTTAACATTTTCAATGTTGTCAGAACCTTCGACTTCCAAGGTGATAGTTTTACCAGT 2811682 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 ||| ||||||||||| |||||||| Sbjct 2811681 CAAGGTTTTTACAAAGATTTGCAT 2811658 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||| || |||| ||| || || ||||| ||||||||||||||||| | Sbjct 2811656 CCACCTCTTAATCTGAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAG 2811597 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| |||||||| || || | || | |||||||||||| || Sbjct 2811596 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGG 2811537 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||||| | || || || | | ||| | |||| || Sbjct 2811536 ATACCTTCTTTGTCTTGAATTT-TAGCTTTAACATTTTCAATGTTATCACTACCTTCAAC 2811478 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| |||| || || | ||||||||||| |||||||| Sbjct 2811477 CTCTAAGGTGATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCAT 2811430 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||| || || | || || || ||||| |||||||| |||||||| | Sbjct 2812568 CCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCCTTTTGAATATTGTAGTCAGAG 2812509 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| |||||||| || || | || | |||||||||||| || Sbjct 2812508 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGA 2812449 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||||| | || ||||| | | ||| | ||| ||| Sbjct 2812448 ATACCTTCTTTGTCTTGAATTT-TGGCTTTGACATTTTCAATGTTATCAGAACCTTCGAC 2812390 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| | || || ||||| ||||||||||| |||||||| Sbjct 2812389 TTCCAATGTGATGGTCTTACCAGTCAAGGTTTTTACAAAGATTTGCAT 2812342 >seq6 Length=3602379 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| ||||||||||||||||| || || || | | || || |||||| |||||| Sbjct 961465 TGAAGAGTTGATTCTTTTTGAATATTATAATCAGAGAGAGTACGACCATCTTCTAATTGT 961406 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || | || | |||||||||||| ||| | ||||| ||||| ||||| | Sbjct 961405 TTACCAGCGAAAATTAATCTTTGTTGATCTGGGGGAATACCTTCTTTATCTTGAATTT-T 961347 Query 18243 TGCTTGACC-TGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 |||| | | | | ||| | |||||| ||| ||| | |||||| |||| || || Sbjct 961346 GGCTTTAACATTTTCAATATTGTCACTACCTTCGACTTCTAATGTGATGGTTTTACCAGT 961287 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | ||||| || ||||||||||| Sbjct 961286 AAGAGTTTTGACGAAAATTTGCAT 961263 Score = 93.3 bits (102), Expect = 3e-14 Identities = 180/261 (69%), Gaps = 11/261 (4%) Strand=Plus/Minus Query 18072 ATTAAAAATACATTTTCTTTTTGTTA---TCCTCCCCGTAGTCTAAGTACCATGTGAAGT 18128 ||||| ||| |||| ||||| ||| ||| || | || ||| | || | ||||| Sbjct 961975 ATTAATAATTTTTTTTTTTTTTTTTAATTTCCACCTCTTAATCTTAAAACTAAATGAAGA 961916 Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||||||||| || ||||| | | || || |||||| |||||||| || Sbjct 961915 GTTGATTCTTTTTGAATATTATAGTCTGAAAGAGTACGACCATCTTCTAATTGTTTACCA 961856 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 || | || | |||||||||||| || | ||||| ||||| ||||| | || || Sbjct 961855 GCGAAAATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATTT-TGGCTTT 961797 Query 18248 GACCTGTGCAACAGTGTC---ACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAA 18304 || | | ||| | | || ||| || ||| | ||||| |||| || || || Sbjct 961796 TACATTTTCAATATTATCTGAACC---TTCAACTTCCAAAGTGATAGTTTTACCTGTTAA 961740 Query 18305 TGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| |||||||| Sbjct 961739 AGTTTTAACAAAGATTTGCAT 961719 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| ||||||||||||||||| ||||| || | | || || |||||| |||||| Sbjct 961693 TGAAGAGTTGATTCTTTTTGAATATTGTAATCTGAAAGAGTACGACCATCTTCTAATTGT 961634 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| | || || | ||||||||| || | ||||| ||||| ||||| | Sbjct 961633 TTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATTT-T 961575 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | ||| |||| | ||| ||| | ||||| |||| || || Sbjct 961574 GGCTTTAACATTTTCAATGTTGTCGCTACCTTCGACTTCTAATGTGATAGTTTTACCAGT 961515 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | ||||| |||||||||||||| Sbjct 961514 GAGAGTTTTAACAAAAATTTGCAT 961491 >seq3 Length=6357299 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||||||||| | || || || ||||| ||||||||||| ||||| | Sbjct 5640225 CCACCTCTTAATCTAAGTACTAAATGGAGAGTGGATTCCTTTTGAATGTTATAGTCAGAG 5640166 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || ||| | ||||| | ||||||||| || Sbjct 5640165 AGAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATAAGACGTTGTTGATCTGGTGGG 5640106 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || ||||| ||| || | | ||| | | ||| || | Sbjct 5640105 ATACCTTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATATTATCAGAACCTTCTACT 5640046 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| || ||| | || || || | |||||| ||||||||||||||| Sbjct 5640045 TCAAGAGTAATGGTCTTTCCAGTAAGTGTTTTAACAAAAATTTGCATT 5639998 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||| | ||||| ||| || || ||||| ||||||||||| ||||| | Sbjct 5879463 CCACCTCTTAATCTTAATACCAAGTGGAGAGTGGATTCCTTTTGAATGTTATAGTCAGAA 5879522 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| |||||||| || || | || | ||||||||| || || Sbjct 5879523 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGA 5879582 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||| | | || || || | | ||| | | ||| || Sbjct 5879583 ATACCTTCTTTATCTTGAATCT-TGGCTTTTACATTTTCAATATTATCAGAACCTTCAAC 5879641 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| | || || || |||||||| ||||||||||||||| Sbjct 5879642 TTCTAAAGTGATGGTCTTACCAGTTAATGTTTTAACAAAAATTTGCATT 5879690 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || ||| | ||| | ||||| || ||||| ||||||||||||||||| | Sbjct 2332291 CCTCCTCTTAATCTTAATACTAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGAT 2332232 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| |||||||| || ||| |||| | ||||||||| || || Sbjct 2332231 AAAGTACGACCATCTTCTAATTGTTTACCTGCAAAGATTAATCTTTGTTGGTCTGGTGGA 2332172 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||||| | || || || | | | | | || | || Sbjct 2332171 ATACCTTCTTTATCTTGAATTT-TAGCTTTAACGTTCTCGATATTATCTGAGCCTTCAAC 2332113 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| |||| || || | ||||| || ||||||||||| Sbjct 2332112 TTCTAATGTGATGGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 2332065 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 18090 TTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTG 18149 |||| | ||| || | || ||| || || | || ||||||||||| |||||||||||| Sbjct 5641146 TTTTAATTTCCACCTCTTAATCTGAGAACTAAATGGAGTGTTGATTCCTTTTGAATGTTG 5641087 Query 18150 TAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGA 18209 || || | | || || |||||| |||||||| || || | || || | ||||||| Sbjct 5641086 TAATCAGAAAGAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGA 5641027 Query 18210 TCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCG 18269 || || | ||||| || || ||||| | || || | ||| |||||| Sbjct 5641026 TCTGGTGGGATACCTTCTTTGTCTTGAATTTTTGTTTTTACATTCTCAATGTTGTCACTA 5640967 Query 18270 GGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||| | || ||| |||| || || | |||||||||||||||||||| Sbjct 5640966 CCTTCAACTTCGAGTGTAATGGTTTTACCAGTGAGAGTTTTTACAAAAATTTGCAT 5640911 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||| | || | |||||| |||||||| ||||||||||| ||||| | Sbjct 5879007 CCACCTCTTAATCTTAAAACTAAGTGAAGAGTTGATTCCTTTTGAATGTTATAGTCAGAG 5879066 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || ||| | || || | ||||||||| || Sbjct 5879067 AGAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGA 5879126 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| ||||| ||| || | | ||| | ||| || | Sbjct 5879127 ATACCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATGTTATCAGAACCTTCAACT 5879186 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| |||| || || | ||||| ||||| |||||||| Sbjct 5879187 TCTAAAGTGATTGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 5879233 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||| || || | || || || ||||| |||||||||||||| || | Sbjct 5640681 CCACCTCTTAATCTGAGGACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 5640622 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| |||||||| || || | || | ||||||||| || || Sbjct 5640621 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGG 5640562 Query 18219 ACGCCTTCCTTATCGGCAA--TTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || || |||||| || || | | ||| | | || | ||| Sbjct 5640561 ATACCTTCTTTGTCTTGAATCTTTGTT--TTAACATTTTCAATATTATCTGAGCCCTCAA 5640504 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||||| | || || || |||||||| ||||| |||||||| Sbjct 5640503 CTTCAAGAGTGATGGTCTTACCAGTTAATGTTTTGACAAAGATTTGCAT 5640455 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || |||||||||||||| |||||||| | | || || |||||| |||||| Sbjct 5878803 TGGAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGAGTACGACCATCTTCTAATTGT 5878862 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| | |||||||||||| || | ||||| ||||| |||| Sbjct 5878863 TTACCGGCAAAGATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATTTTA 5878922 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | ||| | | ||| || ||| | ||||| |||| || || Sbjct 5878923 GCCTTTACATTTTCAATATTATCAGAACCTTCAACTTCCAAAGTGATAGTTTTACCAGTG 5878982 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | ||||| ||||| |||||||| Sbjct 5878983 AGAGTTTTAACAAAGATTTGCAT 5879005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343810446545