Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4 183 4e-41 seq2 123 3e-23 seq6 91.5 2e-13 >seq4 Length=5450249 Score = 183 bits (202), Expect = 4e-41 Identities = 576/885 (65%), Gaps = 33/885 (4%) Strand=Plus/Minus Query 62942 TGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 63001 ||| | ||| || |||||||| ||||| | |||| | | ||||| || ||||| Sbjct 1505013 TGCTATAGAGGCAAGATTACAAACGGCGATTTCATCTGGTGATGTGTATTGAATGATCTC 1504954 Query 63002 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63061 || ||||||||||||| | || || |||||||| | |||||| || ||||| Sbjct 1504953 GGTACAAAGATTACTACTACTAATGGTACCTAAATTCTTTTGATTGGATTTAGCATTACA 1504894 Query 63062 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63121 |||||||| || | ||||||||||||||||||||||| ||||| || ||||| || Sbjct 1504893 GGCATCCTTGTACAAAATGAATGGAGTACCAGTTTCAACTTGAGACTCCATAATGGCGAA 1504834 Query 63122 CCAGACGACTCGAGCCTTTATTATAGATTT--GTATCTC--------CTTTCTCTTTCGT 63171 ||| | || |||| || || | | | | | | || ||| | |||| Sbjct 1504833 CCAAAGTTCTTGAGCTTTAATGACACGTCTTGGGAGGTCAGGTGTTGCTTCGTATTTCAA 1504774 Query 63172 ATAGAGTATACAATCGTTC----GAACTCGTCTCCCCAA-ACATTGTCCAATCTAGGACA 63226 |||||| || || |||| || || || ||| || | || | Sbjct 1504773 ATAGAGAGCACGAT-GTTCCTCTGAGTGAGTTTCAGCAAGACCTGGTGC----------- 1504726 Query 63227 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 63286 ||||| ||||| | | | ||| || || | | | || |||| |||||| | ||| Sbjct 1504725 TTCATTTGGACAAAAGAGGGCCCAATCGCCATTTTGTTCGACACGTTCCATAAAAATATC 1504666 Query 63287 AGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCT 63345 | || ||||||||| ||| ||||||||||| | ||| || || || || || || | Sbjct 1504665 ACTAACCCAAAGAGC-ATAGAATAGATCTCTAGCTCTCATCTCTTCCTTACCAGTGTTTT 1504607 Query 63346 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63405 | || ||||| | || | | | ||||| ||||| ||||||||||| | ||| | Sbjct 1504606 TCTTTAGATCAATAAATTCAAAGACATCAGCGTGCCATGGTTCCAAGTAAACGGCAAAGG 1504547 Query 63406 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63465 | || | ||| || || ||||| | ||| | ||| || | ||| |||| | | Sbjct 1504546 CACCCTTTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGAAAACACGAA 1504487 Query 63466 ACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCAC 63525 |||||| | | ||| || | ||||||||||||| ||||| | | | |||| Sbjct 1504486 GCATTGGCACCAAACCATTGCTTGTACCATTGGTACCACGAATATAACTTTGAGCAGCAC 1504427 Query 63526 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 63585 |||| ||| || || | ||| || || || || | || || || | ||| ||| ||| Sbjct 1504426 GAATCTTATGAACTGCAATACCAATACCACCGGCACTCTTTGAAATGAGTGCACATTGTT 1504367 Query 63586 TTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAG 63645 | || |||||||| || || || || ||| || |||| | || | ||||| | Sbjct 1504366 TCAAAGTGTCATAAATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACAAGATG 1504307 Query 63646 ACATT--TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 ||||| |||||| | || || || || || |||| || || | || || || ||| | Sbjct 1504306 ACATTTGTGGTGATG-GT-GTACCTGCGTTGAATAGAGTTGGTGTGGCATGAGTGAACAA 1504249 Query 63704 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63763 ||| ||||| | | ||||| || | || || || || | || ||| || || Sbjct 1504248 TTTCTCAGACAAACGTTTGTAGGTGTTGATGGCAGATTCGAGGTCTTCGCCATGGATACC 1504189 Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808 | | ||||||||| |||||||| || || | || |||||||| Sbjct 1504188 AATGGAGACACGCATCAACATGTGTTGTGGACGCTCGACAATTTT 1504144 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||||||||| | | | | || || ||||| ||||||||||| || || |||| | Sbjct 1505942 GTGAATTGAATTGCATCAGCGGCAGGACGAGTACGAAGATAGTACATACCAGTCTTTAAA 1505883 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || ||||| ||| |||||||| || ||||| | | | | || || || || Sbjct 1505882 CCTTTCTTCCATGAGTAGAAATGCATTGAGGTGAGTTTAGCAAAGGTTGGTTCAGCAATG 1505823 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 | ||| | | |||||||||||||||||| || || | || |||||||| | ||| Sbjct 1505822 AAAACATTGAAACTTTGACTTTGATCGATGAAAGCACCACGATCAGCAGCCATATCGATG 1505763 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA 62260 | || |||| |||||||||| |||||||| Sbjct 1505762 AGAGTTCTTTGACGGATTTCCCAAACTGTTTTATA 1505728 >seq2 Length=8484197 Score = 123 bits (136), Expect = 3e-23 Identities = 207/295 (70%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 |||||||||||| || || | ||| ||||| | ||||||||| || ||||| || | Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || |||||| || | |||||| | ||||||||| ||| || ||| || || Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 2356725 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCATGT 33758 || || || ||||| ||||| |||| | | ||| | || | ||| |||| | Sbjct 2356724 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGC--AAATGAATCTGAATCATTT 2356667 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| || ||||| || ||||||||||| | ||| || || ||||| || |||||| Sbjct 2356666 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 2356607 Query 33819 AAGAGATAGtttttttCATTAC-TATCTTTAACATAAGTATCGATCAAAAGACTA 33872 || | || | ||| || | ||||||||| |||||| || || ||||||||| Sbjct 2356606 AATA-ATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 2356553 Score = 123 bits (136), Expect = 3e-23 Identities = 207/295 (70%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 |||||||||||| || || | ||| ||||| | ||||||||| || ||||| || | Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || |||||| || | |||||| | ||||||||| ||| || ||| || || Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 3675061 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCATGT 33758 || || || ||||| ||||| |||| | | ||| | || | ||| |||| | Sbjct 3675062 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGC--AAATGAATCTGAATCATTT 3675119 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| || ||||| || ||||||||||| | ||| || || ||||| || |||||| Sbjct 3675120 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 3675179 Query 33819 AAGAGATAGtttttttCATTAC-TATCTTTAACATAAGTATCGATCAAAAGACTA 33872 || | || | ||| || | ||||||||| |||||| || || ||||||||| Sbjct 3675180 AATA-ATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 3675233 Score = 102 bits (112), Expect = 1e-16 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 ||||| |||| ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 2356428 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 2356369 Query 33930 TCGGTAATCTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 || | ||| || ||||| | ||| ||||| ||| | |||||||| || || ||||| Sbjct 2356368 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATC 2356310 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGT 34016 | || |||||||| ||||| |||||| Sbjct 2356309 AGATGCAGCAAAAAATGCCAAAACATGT 2356282 Score = 102 bits (112), Expect = 1e-16 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 ||||| |||| ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 3675358 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 3675417 Query 33930 TCGGTAATCTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 || | ||| || ||||| | ||| ||||| ||| | |||||||| || || ||||| Sbjct 3675418 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATC 3675476 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGT 34016 | || |||||||| ||||| |||||| Sbjct 3675477 AGATGCAGCAAAAAATGCCAAAACATGT 3675504 >seq6 Length=3602379 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 |||| |||||| ||| |||||| || ||||||||||| ||||| || || ||||| || Sbjct 705808 TCATTTATCCATTTTAAAGCCCATTCTGCCTTCTTTTTAACACATGGGATTGTTTCAATT 705749 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 |||||||| || | | ||| ||| |||| |||| | |||| || || ||||||||| Sbjct 705748 GCATTAAAAAGTTTATCTTTAATATTTTTATCCTTAATACAAGTTTCAATTAAAAGACTA 705689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817277218480