Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4 158 1e-33 seq2 138 1e-27 >seq4 Length=5450249 Score = 158 bits (174), Expect = 1e-33 Identities = 1158/1833 (63%), Gaps = 84/1833 (5%) Strand=Plus/Minus Query 36834 ATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTT 36893 ||| ||||| ||||| |||| || ||||| ||| |||||||| ||| ||||| Sbjct 1505904 ATAGTACATACCAGTCTTTAAACCTTTCTTCCATGAGTAGAAATGCATTGAGGTGAGTTT 1505845 Query 36894 TGCGTATGTAGGATTATCTAT--ATATATTGTCATTGATTGACTTTGATCTATAAACGCA 36951 || | || || | | | || | | |||| | | |||||||||||| || || ||| Sbjct 1505844 AGCAAAGGTTGGTTCAGCAATGAAAACATTGAAACT--TTGACTTTGATCGATGAAAGCA 1505787 Query 36952 CCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATAT 37011 || | || || ||||| || | | | | ||||| || |||||||| |||||||| Sbjct 1505786 CCACGATCAGCAGCCATATCGATGAGAGTTCTTTGACGGATTTCCCAAACTGTTTTATAG 1505727 Query 37012 ATTTGTTTTATATTATCTGGTAAATCTAA-ATG--TTGAATAGAACCATTATGTAACA-C 37067 | || ||| | || ||| || | | ||| |||||| |||||| || | || | Sbjct 1505726 AGTTCTTTCAAATCATCAGGGATGCCACCGATGGATTGAATGGAACCACG-TGCAGCAAC 1505668 Query 37068 AATTGTATTCTTTATGTCATTATTCCACATATTTCTACTT--ATTAGTTCTCTCAATAGG 37125 ||| |||||| || || | | || || | | || || || ||| | || Sbjct 1505667 GATTTGATTCTTCATCTC--TGGTGACCAAATGCCCAATTCCATGAGATCTTCGAGTAAT 1505610 Query 37126 TGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTA 37185 ||| || |||| || || || | ||| || | | | || || ||| ||| Sbjct 1505609 TGTTTGTTGACAATTGTGAATTCACCTGCTAAAACACGACGACTGTAAATGTTGGAAGTG 1505550 Query 37186 TATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGT 37245 || ||||||| | | ||||| |||| | |||||| ||| || || || ||||||||| Sbjct 1505549 TAAGGTTCAAAGCATTCATTGTTACCAAGGATTTGACTTGTTGAAGCGGTTGGCATTGGT 1505490 Query 37246 GCTATTAGAAGGCTATTTCTCAATCCATGTGTATT---AATTCTCTTTTTTAGTTCATTC 37302 || || || || ||| | || ||| |||| ||| | | ||||| || | Sbjct 1505489 GCAATGAGGAGTGAATTACGTAAACCACCCTTATTGACAATGTTATCCTTTAGCTCTGCC 1505430 Query 37303 CAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAATACCTTTAC 37360 |||| ||| | |||| | | || |||||||||| |||| || |||||||| Sbjct 1505429 CAATTCCAACGAGAACTTGGTGTAACATT--CCACATATCAAATTGGAGGATACCTTTGG 1505372 Query 37361 TCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAG 37420 ||||| ||| | || | | ||||| | || | | | || | ||| | || Sbjct 1505371 AAGCTGGTGAACCTTTGAAAGATTCATAGGTACCATCACGGATCGCCAATTC---ATGAG 1505315 Query 37421 ATTCTAGT----GCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCT 37476 | | ||| |||||| | || || |||||| |||| | ||||||| | || Sbjct 1505314 AGGC-AGTCAAAGCGGCAAAGTAAATGGTTTCGGCGATTTCAACATTTAATTTAGCGGCG 1505256 Query 37477 TCTTCGCTATCGAATG-CATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACC 37535 | | |||||||| | |||| | || | || || ||||| |||||||| |||| ||| Sbjct 1505255 GCAACACTATCGAAAGGCATA-CGCATTTTAATGAAAACATCGGCCAAACCTTGAATACC 1505197 Query 37536 GATACCTATGGGTCTATGTTTCTTATTAGA---TCTAGACGATTCTATCACTGGATAATA 37592 ||||| || || | |||| | ||| || | ||| | || |||||||||||| Sbjct 1505196 AATACCAATTGGACGATGTCTAAGATTTGAAGTTTTAGCC---TCAGCCACTGGATAATA 1505140 Query 37593 ATTGATATCTATTATTTTATTTAGATTT-------TTAACTA-GTATTTTC-----GTAA 37639 || ||| || || || ||||| |||||| || |||| | || Sbjct 1505139 GTTACGATCGATGATAACGTTAAGATTGACGGTTATTAACTTTGTGATTTCAAATAGGAA 1505080 Query 37640 TT-ATTCTCAA---------CTTGTCGAACA--TAAA--TACGTTATTATTAACAAATTT 37685 || || |||| ||| | || | | | ||| || | | |||||| || Sbjct 1505079 TTGATGGTCAAACTCTTTTTCTTTTGGATCGGTTGAGCCTACTTTTTGACGAACAAACTT 1505020 Query 37686 ACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTAC-TAAATTGTA 37744 | | ||||| | |||||||| || || | ||||||| || | | |||| | Sbjct 1505019 TGGAAGTGCTATAGAGGCAAGATTACAAACGGCGATTTCATCTG-GTGATGTGTATTGAA 1504961 Query 37745 TAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTT 37804 | ||||| ||||| |||||||| ||||| || || ||||| ||||||||||||| Sbjct 1504960 TGATCTCGGTACAAAGATTACTACTACTAATGGTACCTAAATTCTTTTGATTGGATTTAG 1504901 Query 37805 TATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAA 37864 |||||| | ||| || || | || | || || || ||| | ||||| ||| |||| Sbjct 1504900 CATTACAGGCATCCTTGTACAAAATGAATGGAGTACCAGTTTCAACTTGAGACTCCATAA 1504841 Query 37865 TAGATTTCCATAAACTTCTT--GCTTTAACGA-TCG-CTT-TAAtttttttCTTTGTTTC 37919 | | || ||| ||||| ||||||| || || ||| | | ||| ||| Sbjct 1504840 TGGCGAACC--AAAGTTCTTGAGCTTTAATGACACGTCTTGGGAGGTCAGGTGTTGCTTC 1504783 Query 37920 GTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA---TC-GCATAATCCTGGAC 37975 ||||| | ||| | | || | | | | | || ||| | ||||| Sbjct 1504782 GTATTTCAAATAGA---GAGCACGATGTTCCTCTGAGTGAGTTTCAGCA-AGACCTGGTG 1504727 Query 37976 ATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAAT 38035 ||| |||||| | || | ||| || ||| || ||| || ||||||||||| | || Sbjct 1504726 CTTCATTTGGACAAAAGAGGGCCCAATCGCCATTTTGTTCGACACGTTCCATAAAAATAT 1504667 Query 38036 CAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCT 38095 || ||||| | ||| |||| |||| | | ||| ||||| || || | | | Sbjct 1504666 CACTAACCCAAAGAGCATAGAATAGATCTCTAGCTCTCATCTCTTCCTTACC-AGTGTTT 1504608 Query 38096 TTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATT 38154 ||||| || | | ||| || || | |||||||||||||||||| | |||| | | Sbjct 1504607 TTCTTTAGATCAATAAATTCAAAGACATCAGCGTGCCATGGTTCCAAGTAAACGGCAAAG 1504548 Query 38155 GCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTT 38214 || || ||| || |||| || |||| | || | | | || | ||| | | | Sbjct 1504547 GCACCCTTTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGAAAACACGA 1504488 Query 38215 AACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCT 38274 | ||| || || | |||||| | | || || |||| |||||| | ||| Sbjct 1504487 AGCATTGGCACCAAACCATTGCTTGTACCATTGGTACCACGAATATAACTTTGAGCAGCA 1504428 Query 38275 CGTATATTACTTATCGACAAT-CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTG 38333 || || ||| | | | |||| || || ||||| ||| ||||| || | || ||||| Sbjct 1504427 CGAATCTTA-TGAACTGCAATACCAATACCACCGGCACTCTTTGAAATGAGTGCACATTG 1504369 Query 38334 TTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACT 38393 ||| || || ||| | ||||| || || || ||||| ||| | | | |||||| Sbjct 1504368 TTTCAAAGTGTCATAAATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACAAGA 1504309 Query 38394 AGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCA 38453 |||||||| || |||| || || ||||| |||| || || | ||||| ||||| | Sbjct 1504308 TGACATTTGTGGTGATGGTGTACCTGCGTTGAATAGAGTTGGTGTGGCATGAGTGAACAA 1504249 Query 38454 TTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACC 38513 ||| || |||||| || || || | || || || | || |||| || ||||| Sbjct 1504248 TTTCTCAGACAAACGTTTGTAGGTGTTGATGGCAGATTCGAGGTCTTCGCCATGGATACC 1504189 Query 38514 TAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAG 38573 | || || | ||| | ||| |||||||| | || | |||||| ||| | | Sbjct 1504188 AATGGAGACACGCATCAACATGTGTTGTGGACGCTCGACAATTTTACCATTGATACGATG 1504129 Query 38574 TAGATACGATTTTTCTAATGTTTTTATTCCAAA 38606 ||||| || ||| |||||||| | |||||| Sbjct 1504128 AAGATAGGAACGTTCCAATGTTTTGAATCCAAA 1504096 >seq2 Length=8484197 Score = 138 bits (152), Expect = 1e-27 Identities = 210/294 (71%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| || ||||||||||||||||||||||| | |||| |||||| ||||||||||| Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 || |||| || |||| ||||| | ||||||||| | | ||| ||| || || Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 2356725 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT-ACCTTGTTGCTAGATA 11807 ||| ||||| || ||||||||||| || | | |||| || || | || | | || Sbjct 2356724 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAATGAATCTGAATC-ATTTA 2356666 Query 11808 TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAA 11867 ||||| || ||||| || || |||||||| | ||| |||||||| || || |||| Sbjct 2356665 TCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTAA 2356606 Query 11868 ATAAATGCATTTTTTCTAT-ATTATCTCTTACATATGTATCTATTAATAAACTA 11920 || ||| || ||| | | |||||| | | ||| || || ||||| | |||| Sbjct 2356605 AT-AATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 2356553 Score = 138 bits (152), Expect = 1e-27 Identities = 210/294 (71%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| || ||||||||||||||||||||||| | |||| |||||| ||||||||||| Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 || |||| || |||| ||||| | ||||||||| | | ||| ||| || || Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 3675061 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT-ACCTTGTTGCTAGATA 11807 ||| ||||| || ||||||||||| || | | |||| || || | || | | || Sbjct 3675062 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAATGAATCTGAATC-ATTTA 3675120 Query 11808 TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAA 11867 ||||| || ||||| || || |||||||| | ||| |||||||| || || |||| Sbjct 3675121 TCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTAA 3675180 Query 11868 ATAAATGCATTTTTTCTAT-ATTATCTCTTACATATGTATCTATTAATAAACTA 11920 || ||| || ||| | | |||||| | | ||| || || ||||| | |||| Sbjct 3675181 AT-AATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 3675233 Score = 114 bits (126), Expect = 1e-20 Identities = 172/238 (72%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 11878 TTTTTCTATATTATCTCTT-ACATATGTATCT-ATTAATA---AACTATACATTTCTGAA 11932 ||||||| ||||| ||| | |||| ||| | || |||| | ||||| |||| ||| Sbjct 2356473 TTTTTCTTTATTAAAACTTTATATATATATATGATAAATATTTACCTATAAGTTTCAGAA 2356414 Query 11933 TGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACA 11992 || |||||||| || || |||||||| ||||||||||||| ||| |||| | ||||| Sbjct 2356413 TGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAATTTGTACT 2356354 Query 11993 TCC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAA 12051 || ||||||| ||| || | || |||||||||||||||||| | |||||||| Sbjct 2356353 TCAGACATAAA-TCTAGTTGCAAGGTTTTCATTTACAATACCATCAGATGCAGCAAAAAA 2356295 Query 12052 TGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA---TCCCAATCA 12106 ||| | | |||| || || | ||| | | ||||||||| ||||||||| Sbjct 2356294 TGCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAATTTATATTCCCAATCA 2356237 Score = 114 bits (126), Expect = 1e-20 Identities = 172/238 (72%), Gaps = 10/238 (4%) Strand=Plus/Plus Query 11878 TTTTTCTATATTATCTCTT-ACATATGTATCT-ATTAATA---AACTATACATTTCTGAA 11932 ||||||| ||||| ||| | |||| ||| | || |||| | ||||| |||| ||| Sbjct 3675313 TTTTTCTTTATTAAAACTTTATATATATATATGATAAATATTTACCTATAAGTTTCAGAA 3675372 Query 11933 TGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACA 11992 || |||||||| || || |||||||| ||||||||||||| ||| |||| | ||||| Sbjct 3675373 TGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAATTTGTACT 3675432 Query 11993 TC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAA 12051 || |||| |||||| || | || |||||||||||||||||| | |||||||| Sbjct 3675433 TCAGACAT-AAATCTAGTTGCAAGGTTTTCATTTACAATACCATCAGATGCAGCAAAAAA 3675491 Query 12052 TGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA---TCCCAATCA 12106 ||| | | |||| || || | ||| | | ||||||||| ||||||||| Sbjct 3675492 TGCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAATTTATATTCCCAATCA 3675549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524559881040