Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4 179 5e-40 seq2 132 6e-26 seq6 91.5 2e-13 >seq4 Length=5450249 Score = 179 bits (198), Expect = 5e-40 Identities = 567/870 (65%), Gaps = 33/870 (4%) Strand=Plus/Minus Query 65735 TGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 65794 ||| | ||| || |||||||||||||| | |||| | | ||||| || ||||| Sbjct 1505013 TGCTATAGAGGCAAGATTACAAACGGCGATTTCATCTGGTGATGTGTATTGAATGATCTC 1504954 Query 65795 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 65854 || ||||||||||||| | ||||| |||||||| | |||||| || ||||| Sbjct 1504953 GGTACAAAGATTACTACTACTAATGGTACCTAAATTCTTTTGATTGGATTTAGCATTACA 1504894 Query 65855 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 65914 |||||||| || | ||||||||||||||||||||||| ||||| || ||||| || Sbjct 1504893 GGCATCCTTGTACAAAATGAATGGAGTACCAGTTTCAACTTGAGACTCCATAATGGCGAA 1504834 Query 65915 CCAGACGACTCGAGCCTTTATTATAGATTT------GT-ATCTCTT--TTC-TCTTTCGT 65964 ||| | || |||| || || | | | | || | | || ||| | |||| Sbjct 1504833 CCAAAGTTCTTGAGCTTTAATGACACGTCTTGGGAGGTCAGGTGTTGCTTCGTATTTCAA 1504774 Query 65965 ATAGTGTATACAATCGTTC----GAACTCGTCTCCCCAA-ACATTGTCCAATCCAGGACA 66019 |||| | || || |||| || || || ||| || | || | Sbjct 1504773 ATAGAGAGCACGAT-GTTCCTCTGAGTGAGTTTCAGCAAGACCTGGTGC----------- 1504726 Query 66020 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 66079 ||||| ||||| | | | ||| || || | | | || |||| |||||| | ||| Sbjct 1504725 TTCATTTGGACAAAAGAGGGCCCAATCGCCATTTTGTTCGACACGTTCCATAAAAATATC 1504666 Query 66080 AGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 66138 | || ||||||||| ||| |||| |||||| | ||| || || || || || || | Sbjct 1504665 ACTAACCCAAAGAGC-ATAGAATAGATCTCTAGCTCTCATCTCTTCCTTACCAGTGTTTT 1504607 Query 66139 TTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAA 66198 | || ||||| | || | | | |||| ||||| ||||||||||| | ||| | Sbjct 1504606 TCTTTAGATCAATAAATTCAAAGACATCAGCGTGCCATGGTTCCAAGTAAACGGCAAAGG 1504547 Query 66199 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 66258 | || | ||| || || ||||| | ||| | ||| || | ||| |||| | | Sbjct 1504546 CACCCTTTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGAAAACACGAA 1504487 Query 66259 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCAC 66318 |||||| | | ||||||| |||||||||||| || ||||| ||| | |||| Sbjct 1504486 GCATTGGCACCAAACCATTGCTTGTACCATTGGTACCACGAATATAACTTTGAGCAGCAC 1504427 Query 66319 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 66378 |||| ||| || || | ||| || || || || | || || || | ||| ||| ||| Sbjct 1504426 GAATCTTATGAACTGCAATACCAATACCACCGGCACTCTTTGAAATGAGTGCACATTGTT 1504367 Query 66379 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 66438 | || || ||||| || || || || ||| ||| |||| | || | ||||| | Sbjct 1504366 TCAAAGTGTCATAAATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACAAGATG 1504307 Query 66439 ACATT--TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496 ||||| |||||| | || || || || |||| || || | || || || ||| | Sbjct 1504306 ACATTTGTGGTGATG--GTGTACCTGCGTTGAATAGAGTTGGTGTGGCATGAGTGAACAA 1504249 Query 66497 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 66556 ||| ||||| | | ||||| || | || || || || | || ||| || || Sbjct 1504248 TTTCTCAGACAAACGTTTGTAGGTGTTGATGGCAGATTCGAGGTCTTCGCCATGGATACC 1504189 Query 66557 TACTGCGACACGCATTAACATGTGCTGAGG 66586 | | ||||||||| |||||||| || || Sbjct 1504188 AATGGAGACACGCATCAACATGTGTTGTGG 1504159 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||||||| | | | | || || ||||| ||||||||||| || || |||| | Sbjct 1505942 GTGAATTGAATTGCATCAGCGGCAGGACGAGTACGAAGATAGTACATACCAGTCTTTAAA 1505883 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || ||||| ||| |||||||| || ||||| | | | | || || || || Sbjct 1505882 CCTTTCTTCCATGAGTAGAAATGCATTGAGGTGAGTTTAGCAAAGGTTGGTTCAGCAATG 1505823 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 | ||| | | |||||||||||||||||| || || | || |||||||| | ||| Sbjct 1505822 AAAACATTGAAACTTTGACTTTGATCGATGAAAGCACCACGATCAGCAGCCATATCGATG 1505763 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 65053 | || |||| | |||||||||| |||||||| Sbjct 1505762 AGAGTTCTTTGACGGATTTCCCAAACTGTTTTATA 1505728 >seq2 Length=8484197 Score = 132 bits (146), Expect = 6e-26 Identities = 209/295 (71%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 |||||||||||| || |||| ||| ||||| | ||||||||| || ||||| || | Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 || |||||| || | |||||| | ||||||||| || ||| |||| || || Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 2356725 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG--TCATGT 36334 || || || ||||| ||||| |||| | | ||| | || | ||| |||| | Sbjct 2356724 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGC--AAATGAATCTGAATCATTT 2356667 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 ||||| || ||||| || ||||||||||| | ||| || ||||| || || |||||| Sbjct 2356666 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 2356607 Query 36395 AAGAGATAGtttttttCATTAC-TATCTTTAACATATGTATCAATCAAAAGACTA 36448 || | || | ||| || | ||||||||| ||| || ||||| ||||||||| Sbjct 2356606 AATA-ATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 2356553 Score = 132 bits (146), Expect = 6e-26 Identities = 209/295 (71%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 |||||||||||| || |||| ||| ||||| | ||||||||| || ||||| || | Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 || |||||| || | |||||| | ||||||||| || ||| |||| || || Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 3675061 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG--TCATGT 36334 || || || ||||| ||||| |||| | | ||| | || | ||| |||| | Sbjct 3675062 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGC--AAATGAATCTGAATCATTT 3675119 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 ||||| || ||||| || ||||||||||| | ||| || ||||| || || |||||| Sbjct 3675120 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 3675179 Query 36395 AAGAGATAGtttttttCATTAC-TATCTTTAACATATGTATCAATCAAAAGACTA 36448 || | || | ||| || | ||||||||| ||| || ||||| ||||||||| Sbjct 3675180 AATA-ATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 3675233 Score = 109 bits (120), Expect = 7e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 ||||| |||| ||||| || |||||||| || |||||||| || ||||||||||| || Sbjct 2356428 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 2356369 Query 36506 TCGGTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 36564 || | ||| |||||||| | ||| ||||| ||| | |||||||| || || || || Sbjct 2356368 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATC 2356310 Query 36565 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTT 36624 | || |||||||| ||||| |||||| || |||| ||| || ||||| ||| Sbjct 2356309 AGATGCAGCAAAAAATGCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAATTT 2356250 Query 36625 AT 36626 || Sbjct 2356249 AT 2356248 Score = 109 bits (120), Expect = 7e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 ||||| |||| ||||| || |||||||| || |||||||| || ||||||||||| || Sbjct 3675358 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 3675417 Query 36506 TCGGTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 36564 || | ||| |||||||| | ||| ||||| ||| | |||||||| || || || || Sbjct 3675418 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATC 3675476 Query 36565 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTT 36624 | || |||||||| ||||| |||||| || |||| ||| || ||||| ||| Sbjct 3675477 AGATGCAGCAAAAAATGCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAATTT 3675536 Query 36625 AT 36626 || Sbjct 3675537 AT 3675538 >seq6 Length=3602379 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 |||| |||||| ||| |||||| || ||||||||||| ||||| || ||||| || || Sbjct 705808 TCATTTATCCATTTTAAAGCCCATTCTGCCTTCTTTTTAACACATGGGATTGTTTCAATT 705749 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 |||||||| || | | ||| ||| |||| |||| | | || ||||| ||||||||| Sbjct 705748 GCATTAAAAAGTTTATCTTTAATATTTTTATCCTTAATACAAGTTTCAATTAAAAGACTA 705689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172462686440