Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 1e-15 seq3 93.3 4e-14 seq4 91.5 1e-13 seq5 86.0 6e-12 >seq6 Length=3602379 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | |||||||| |||| || || ||||||||||| || ||||| | Sbjct 961717 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTGTAATC--TG 961660 Query 139598 ATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | | | ||| ||||| | |||||||||||| | || |||||||| ||||| || | Sbjct 961659 AAAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTG 961600 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCC 139714 | || |||||||| || ||| |||| | |||| | || || || ||||| | || Sbjct 961599 GAATACCTTCTTTATC-TTGAATTTTGGCTTTAACATTTTCAATGTTGTCGCTACCTTCG 961541 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || | || || || || | ||||| || || ||||||||| Sbjct 961540 ACTTCTAATGTGATAGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCATA 961490 >seq3 Length=6357299 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||||||||||| | || || || ||||| |||||||||||| Sbjct 3722555 CCACCTCTTAATCTTAAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATCGGAT 3722614 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||| ||| |||| |||||||| ||||| || || Sbjct 3722615 AAAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGG 3722674 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | ||| | | ||| | |||| | || || Sbjct 3722675 ATACCTTCTTTGTC-TTGAATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTCAAC 3722733 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || || || ||||| ||||| |||||||| Sbjct 3722734 TTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAACGAAGATTTGCAT 3722781 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||||||||||||| || || || |||||||||||||| || Sbjct 5879007 CCACCTCTTAATCTTAAAACTAAGTGAAGAGTTGATTCCTTTTGAATGTTATAGTCAGAG 5879066 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||||||| | || |||||||| ||||| || || Sbjct 5879067 AGAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGA 5879126 Query 139658 ATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||||| || ||| |||| Sbjct 5879127 ATACCTTCTTTATC-TTGAATTTT 5879149 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | | |||||| || | || || || ||||||||||| ||||| Sbjct 5641137 CCACCTCTTAATCTGAGAACTAAATGGAGTGTTGATTCCTTTTGAATGTTGTAATCAGAA 5641078 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||| || | || |||||||| ||||| || || Sbjct 5641077 AGAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGG 5641018 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||||||||| | | || || |||| | || || Sbjct 5641017 ATACCTTCTTTGTC-TTGAATTTTTGTTTTTACATTCTCAATGTTGTCACTACCTTCAAC 5640959 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || || | |||||||| || ||||||||| Sbjct 5640958 TTCGAGTGTAATGGTTTTACCAGTGAGAGTTTTTACAAAAATTTGCATA 5640910 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||||||||||| | || || || |||||||||||||| ||| Sbjct 5879235 CCACCTCTTAATCTTAAAACTAAGTGGAGAGTGGATTCCTTTTGAATGTTATAGTCGGAA 5879294 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||||||||||| | || |||||||| ||||| || || Sbjct 5879295 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCTGGTGGA 5879354 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 || |||||||| || || | || | |||| | || || || | || | || || Sbjct 5879355 ATACCTTCTTTATC-TTGGATCTTGGCTTTAACATTTTCAATGTTATCAGAACCTTCAAC 5879413 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || | ||||| || || ||||||||| Sbjct 5879414 TTCTAAAGTGATGGTCTTACCAGTGAGAGTTTTAACAAAAATTTGCATA 5879462 >seq4 Length=5450249 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||||||||||| | || || ||||||||||| || ||||| Sbjct 5083938 CCACCTCTTAATCTTAAAACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAG 5083997 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||||||| | || |||||||| ||||| || || Sbjct 5083998 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGA 5084057 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| | |||| | | ||| | | || | || || Sbjct 5084058 ATACCTTCTTTATC-TTGAATTTTGGCTTTAACATTTTCAATATTATCAGATCCTTCAAC 5084116 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | || || || || | ||||| || || ||||||||| Sbjct 5084117 CTCCAAGGTGATAGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCATA 5084165 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||||||||||||| || || || |||||||| || ||||| Sbjct 5084394 CCACCTCTTAATCTTAAAACTAAGTGAAGAGTTGATTCCTTTTGAATATTGTAATCAGAG 5084453 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||||||| | || |||||||| ||||| || || Sbjct 5084454 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGA 5084513 Query 139658 ATGCCTTCTTTGTCGGTGATTTT 139680 || |||||||| || |||||| Sbjct 5084514 ATACCTTCTTTATCTTGGATTTT 5084536 >seq5 Length=5125352 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | |||||||| || | || || |||||||||||||| || || Sbjct 2811884 CCACCTCTTAATCTTAAAACTAAATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAG 2811825 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||||||||||| | || | | ||| ||||| || || Sbjct 2811824 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGG 2811765 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 || ||||||||||| || |||| | |||| | || || || |||| | || || Sbjct 2811764 ATACCTTCTTTGTC-TTGGATTTTGGCTTTAACATTTTCAATGTTGTCAGAACCTTCGAC 2811706 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || || || ||||| |||||||| || ||||||||| Sbjct 2811705 TTCCAAGGTGATAGTTTTACCAGTCAAGGTTTTTACAAAGATTTGCATA 2811657 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | | |||||| || | || || || ||||||||||| ||||| Sbjct 2812796 CCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 2812737 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||||||||||| | || |||||||| ||||| || || Sbjct 2812736 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGA 2812677 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 || ||||||||||| || |||| | |||| | || || || | || | || || Sbjct 2812676 ATACCTTCTTTGTC-TTGGATTTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGAC 2812618 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || || || || || ||||| || || ||||||||| Sbjct 2812617 TTCCAAGGTGATAGTTTTACCTGTTAAAGTTTTAACAAAGATTTGCATA 2812569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063745767200