Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 215 7e-51 seq2 127 3e-24 seq6 91.5 2e-13 >seq4 Length=5450249 Score = 215 bits (238), Expect = 7e-51 Identities = 1144/1799 (64%), Gaps = 66/1799 (4%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||||||||| | | | | || || ||||| ||||||||||| || || |||| | Sbjct 1505942 GTGAATTGAATTGCATCAGCGGCAGGACGAGTACGAAGATAGTACATACCAGTCTTTAAA 1505883 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || ||||| |||||||||||| || ||||| | | | | || || || || Sbjct 1505882 CCTTTCTTCCATGAGTAGAAATGCATTGAGGTGAGTTTAGCAAAGGTTGGTTCAGCAATG 1505823 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 | ||| | | |||||||||||||||||| || || | || |||||||| | ||| Sbjct 1505822 AAAACATTGAAACTTTGACTTTGATCGATGAAAGCACCACGATCAGCAGCCATATCGATG 1505763 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 | || |||| | |||||||||| |||||||| | | || | ||| || || | | Sbjct 1505762 AGAGTTCTTTGACGGATTTCCCAAACTGTTTTATAGAGTTCTTTCAAATCATCAGGGATG 1505703 Query 78958 TT-----TGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCAT 79012 || ||| ||||||| |||| | || | || |||||| |||||| Sbjct 1505702 CCACCGATGGATT--GAATGGAACCACGTGCAGCAACGATTTGATTCTTCATCTCTGGTG 1505645 Query 79013 TCCATAATTTTCTCT-CGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 79071 ||| ||| | | | | | | || || | || || || | | ||||| Sbjct 1505644 ACCA-AATGCCCAATTCCATGAGATCTTCGAGTAATTGTTTGTTGACAATTGTGAATTCA 1505586 Query 79072 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTT 79131 || | || || | ||| ||||||| || || || ||||| | ||||||| || Sbjct 1505585 CCTGCTAAAACACGACGACTGTAAATGTTGGAAGTGTAAGGTTCAAAGCATTCATTGTTA 1505526 Query 79132 CCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGA 79191 || | |||||| ||||| || |||||||| ||||| | | | ||| | | | Sbjct 1505525 CCAAGGATTTGACTTGTTGAAGCGGTTGGCATTGGTGCAATGAGGAGTGAATTACGTAAA 1505466 Query 79192 CCGTA-TGATCTGA---TTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGAC 79247 || | || ||| | ||||| ||||| | |||||| |||| || | || Sbjct 1505465 CCACCCTTAT-TGACAATGTTATCCTTTAGCTCTGCCCAATTCCAACGAGAACTTGGTGT 1505407 Query 79248 AACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTC 79307 ||||||||| | |||| |||| || ||||| || ||| ||| ||| || | | ||| Sbjct 1505406 AACATTCCACATATCAAATTGGAGGATACCTTTGGAAGCTGGTGAACCTTTGAAAGATTC 1505347 Query 79308 ATAAGGTCCTTC-CTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGG 79366 ||| | || || | ||| | |||||| | || || || | | ||||||| Sbjct 1505346 ATAGGTACCATCACGGATCGCC-AATTCATGAGAGGCAGTCAAAGCGGCAAAGTAAATGG 1505288 Query 79367 TTTCGAAAATCTTCTTATTGAGATCTTGTG-CTTCTAGGCTATCAAATGG-ATA---ATT 79421 ||||| || | ||| | || | | | | | | ||||| || || ||| ||| Sbjct 1505287 TTTCGGCGATTTCAACATTTA-ATTTAGCGGCGGCAACACTATCGAAAGGCATACGCATT 1505229 Query 79422 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 79481 | | ||| | | || || || ||||||| ||||||||| || || | |||||| Sbjct 1505228 TTAATGAAAACA----TCGGCCAAACCTTGAATACCAATACCAATTGGACGATGTCTAAG 1505173 Query 79482 ATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 ||| ||| ||| ||| || | | |||||||| ||| ||| || || || ||||| Sbjct 1505172 ATTTGAAGTTTTAGCCTCAGCCACTGGATAATAGTTACGATCGATGATAACGTTAAGATT 1505113 Query 79542 CCTGACTATTA-CTTTGACCACATCCTTTAGT--TTGAG----AAAATCAA--------- 79585 | ||||| ||||| | || ||| |||| ||| || Sbjct 1505112 GACGGTTATTAACTTTGTG-ATTTCAAATAGGAATTGATGGTCAAACTCTTTTTCTTTTG 1505054 Query 79586 -ATCGT-----CCATCTATT------ACAAACATGTTCAACGCGACAGATGCCAGATTAC 79633 |||| || || || |||||| | | || | ||| || ||||||| Sbjct 1505053 GATCGGTTGAGCCTACTTTTTGACGAACAAACTTTGGAAGTGCTATAGAGGCAAGATTAC 1504994 Query 79634 AAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACT 79693 ||||||| | |||| | | ||||| || || || || || || ||||||| Sbjct 1504993 AAACGGCGATTTCATCTGGTGATGTGTATTGAATGATCTCGGTACAAAGATTACTACTAC 1504934 Query 79694 TAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGA 79753 ||||||| |||||||| | |||||| || ||||| |||||||| || | ||||| Sbjct 1504933 TAATGGTACCTAAATTCTTTTGATTGGATTTAGCATTACAGGCATCCTTGTACAAAATGA 1504874 Query 79754 ACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 79813 | |||||||||||||||| ||||| || ||||| || ||| | || |||| || | Sbjct 1504873 ATGGAGTACCAGTTTCAACTTGAGACTCCATAATGGCGAACCAAAGTTCTTGAGCTTTAA 1504814 Query 79814 TTATA-GACTTGT-ATCTCTTTTCTCT-TTCGTATTGTGTATATAATCGTTCGAACT-CG 79869 | | | | |||| | || | | |||||||| ||| | | ||| | | Sbjct 1504813 TGACACGTCTTGGGAGGTCAGGTGTTGCTTCGTATTTCAAATAGAGA-GCACGATGTTCC 1504755 Query 79870 TCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCA 79929 ||| | || | | || || ||| | ||||| | | | ||| || ||| Sbjct 1504754 TCTGAGTGAGTTTCAGCAAGACCTGGTGCTTCATTTGGACAAAAGAGGGCCCAATCGCCA 1504695 Query 79930 TCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCT 79988 | | | || |||| |||||| | |||| || ||||||||| ||| ||||||||||| Sbjct 1504694 TTTTGTTCGACACGTTCCATAAAAATATCACTAACCCAAAGAGC-ATAGAATAGATCTCT 1504636 Query 79989 GGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 80048 | ||| ||| || || || || || || || ||||| | || | | | ||||| Sbjct 1504635 AGCTCTCATCTCTTCCTTACCAGTGTTTTTCTTTAGATCAATAAATTCAAAGACATCAGC 1504576 Query 80049 ATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTAT 80108 ||||| ||||||||||| | ||| | | ||| || ||| || || ||||| | Sbjct 1504575 GTGCCATGGTTCCAAGTAAACGGCAAAGGCACCCTTTCTCTTGCCACCACCTTGATCGAC 1504516 Query 80109 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATT 80168 ||| | ||| || | ||| |||| | | |||||| | | ||||||| ||||||||| Sbjct 1504515 GTAACGAGCAGTATCATTGAAAACACGAAGCATTGGCACCAAACCATTGCTTGTACCATT 1504456 Query 80169 GGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCC 80228 ||| || ||||| ||| | |||||||| ||| || || | ||| || || || Sbjct 1504455 GGTACCACGAATATAACTTTGAGCAGCACGAATCTTATGAACTGCAATACCAATACCACC 1504396 Query 80229 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATC 80288 || | || || || | ||| ||| |||| || || ||||| || || || || ||| Sbjct 1504395 GGCACTCTTTGAAATGAGTGCACATTGTTTCAAAGTGTCATAAATACCATCGATTGAATC 1504336 Query 80289 ATCAATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTAGTTCCCGCATTA 80346 || |||| | || | ||||| |||||| |||||| | || || || || Sbjct 1504335 CTCCTTCATTTGAACCAAGAAACAAGATGACATTTGTGGTGATG--GTGTACCTGCGTTG 1504278 Query 80347 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATA 80406 |||| || || | || || || ||| |||| ||||||| | ||||| || | || Sbjct 1504277 AATAGAGTTGGTGTGGCATGAGTGAACAATTTCTCAGACAAACGTTTGTAGGTGTTGATG 1504218 Query 80407 GCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGG 80465 || ||||| | || ||| || || | | ||||||||| |||||||| || || Sbjct 1504217 GCAGATTCGAGGTCTTCGCCATGGATACCAATGGAGACACGCATCAACATGTGTTGTGG 1504159 >seq2 Length=8484197 Score = 127 bits (140), Expect = 3e-24 Identities = 208/295 (71%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 |||||||||||| || || | ||| ||||| | ||||| ||| || ||||| || | Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || |||||| || | |||||| | ||||||||| || ||| ||| || || Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 2356725 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG--TCATGT 50136 || || || ||||| ||||| ||||| | | ||| | || || ||| |||| | Sbjct 2356724 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGC--AAATGAATCTGAATCATTT 2356667 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| || ||||| || ||||||||||| | ||| || || ||||| || |||||| Sbjct 2356666 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 2356607 Query 50197 AAGAGATAGtttttttCATTAC-TATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || | || | ||| || | ||||||||| |||||| || || ||||||||| Sbjct 2356606 AATA-ATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 2356553 Score = 127 bits (140), Expect = 3e-24 Identities = 208/295 (71%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 |||||||||||| || || | ||| ||||| | ||||| ||| || ||||| || | Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || |||||| || | |||||| | ||||||||| || ||| ||| || || Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 3675061 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG--TCATGT 50136 || || || ||||| ||||| ||||| | | ||| | || || ||| |||| | Sbjct 3675062 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGC--AAATGAATCTGAATCATTT 3675119 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| || ||||| || ||||||||||| | ||| || || ||||| || |||||| Sbjct 3675120 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 3675179 Query 50197 AAGAGATAGtttttttCATTAC-TATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || | || | ||| || | ||||||||| |||||| || || ||||||||| Sbjct 3675180 AATA-ATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 3675233 Score = 104 bits (114), Expect = 3e-17 Identities = 136/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 ||||| |||| ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 2356428 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 2356369 Query 50308 TCGGTAATCTGCACTTCTGTACA-AAATC--GTTCAGCTAAATTTTCATTCACTATTCCG 50364 || | ||| || ||||| | ||| ||||| ||| || | |||||||| || || || Sbjct 2356368 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTT--GCAAGGTTTTCATTTACAATACCA 2356312 Query 50365 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGT 50424 ||| || |||||||| ||||| |||||| || ||||| ||| || ||||| | Sbjct 2356311 TCAGATGCAGCAAAAAATGCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAAT 2356252 Query 50425 TTAT 50428 |||| Sbjct 2356251 TTAT 2356248 Score = 104 bits (114), Expect = 3e-17 Identities = 136/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 ||||| |||| ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 3675358 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 3675417 Query 50308 TCGGTAATCTGCACTTCTGTACA-AAATC--GTTCAGCTAAATTTTCATTCACTATTCCG 50364 || | ||| || ||||| | ||| ||||| ||| || | |||||||| || || || Sbjct 3675418 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTT--GCAAGGTTTTCATTTACAATACCA 3675474 Query 50365 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGT 50424 ||| || |||||||| ||||| |||||| || ||||| ||| || ||||| | Sbjct 3675475 TCAGATGCAGCAAAAAATGCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAAT 3675534 Query 50425 TTAT 50428 |||| Sbjct 3675535 TTAT 3675538 >seq6 Length=3602379 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 |||| |||||| ||| |||||| || ||||||||||| ||||| || || ||||| || Sbjct 705808 TCATTTATCCATTTTAAAGCCCATTCTGCCTTCTTTTTAACACATGGGATTGTTTCAATT 705749 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 |||||||| || | | ||| ||| |||| |||| | |||| || || ||||||||| Sbjct 705748 GCATTAAAAAGTTTATCTTTAATATTTTTATCCTTAATACAAGTTTCAATTAAAAGACTA 705689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268431887240