Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 seq6 84.2 2e-11 >seq2 Length=8484197 Score = 143 bits (158), Expect = 3e-29 Identities = 293/425 (69%), Gaps = 19/425 (4%) Strand=Plus/Minus Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 ||| | ||||||| ||||||||| |||||||||||| || | |||||||| |||| Sbjct 2357015 TAAACGATCAGCACAAAACTCAATGTATTGAGACATTGAACGCGAGTTCATACCAATTAA 2356956 Query 13760 TTTTACAGGAATTATATTGGTTAAA-AATTCTTTTTCTATAGAC-ACAGCCTCTTTTATA 13817 | || || | | ||| | || ||||| ||||| | | | ||||| ||| |||| Sbjct 2356955 ATCCACTGGTAATG-ATTCGCAAATGAATTCCTTTTC-ACATTCGACAGCATCTCTTATC 2356898 Query 13818 ATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGA----TGTTTAAAAATTAAACA 13873 || | ||| | | || || | | ||| | ||| || | | | ||| Sbjct 2356897 ATTTTCTCAATGACTT--TTGGATCCAACTTTCTTTGTAACTTTGTGTAGAGA--AGACA 2356842 Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933 || ||||||||||| | || || || | ||| | ||| |||||||||||||| || Sbjct 2356841 TGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAAACC 2356782 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA--TGACCCGGAAAAGAAT 13991 | |||| || |||| ||||| ||||||||||||| | ||| | | | ||||| || Sbjct 2356781 TTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAA--AT 2356724 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 || ||||||||||| ||||| || | || |||||| |||| || || | || | Sbjct 2356723 ATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAATGAATCTGAATCATT---T 2356667 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 |||||| || |||||||| | || ||||||||| | ||||||||||| |||||| Sbjct 2356666 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 2356607 Query 14112 AATAA 14116 ||||| Sbjct 2356606 AATAA 2356602 Score = 143 bits (158), Expect = 3e-29 Identities = 293/425 (69%), Gaps = 19/425 (4%) Strand=Plus/Plus Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 ||| | ||||||| ||||||||| |||||||||||| || | |||||||| |||| Sbjct 3674771 TAAACGATCAGCACAAAACTCAATGTATTGAGACATTGAACGCGAGTTCATACCAATTAA 3674830 Query 13760 TTTTACAGGAATTATATTGGTTAAA-AATTCTTTTTCTATAGAC-ACAGCCTCTTTTATA 13817 | || || | | ||| | || ||||| ||||| | | | ||||| ||| |||| Sbjct 3674831 ATCCACTGGTAATG-ATTCGCAAATGAATTCCTTTTC-ACATTCGACAGCATCTCTTATC 3674888 Query 13818 ATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGA----TGTTTAAAAATTAAACA 13873 || | ||| | | || || | | ||| | ||| || | | | ||| Sbjct 3674889 ATTTTCTCAATGACTT--TTGGATCCAACTTTCTTTGTAACTTTGTGTAGAGA--AGACA 3674944 Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933 || ||||||||||| | || || || | ||| | ||| |||||||||||||| || Sbjct 3674945 TGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAAACC 3675004 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTG--CAGCAAATGACCCGGAAAAGAAT 13991 | |||| || |||| ||||| ||||||||||||| || || | | | |||| ||| Sbjct 3675005 TTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAA--AAT 3675062 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 || ||||||||||| ||||| || | || |||||| |||| || || | || | Sbjct 3675063 ATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAATGAATCTGAATCATT---T 3675119 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 |||||| || |||||||| | || ||||||||| | ||||||||||| |||||| Sbjct 3675120 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 3675179 Query 14112 AATAA 14116 ||||| Sbjct 3675180 AATAA 3675184 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 7/193 (4%) Strand=Plus/Minus Query 14116 AATATTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTA---AGCTATACA 14169 ||| | | || |||||| || ||| | || ||| ||| | ||| || | ||||| Sbjct 2356480 AATCTACTTTTTCTTTATTAAAACTTTATATATATATATGA-TAAATATTTACCTATAAG 2356422 Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACC 14229 ||||||| ||||| ||||| || || || ||||||||||| || ||||| ||||| | Sbjct 2356421 TTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAA 2356362 Query 14230 ATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 ||||||||| || |||||| || | |||||||| || ||||||||| || | Sbjct 2356361 TTTGTACTTCAGACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATCAGATGCAG 2356302 Query 14290 CAAAAAATGCCAA 14302 ||||||||||||| Sbjct 2356301 CAAAAAATGCCAA 2356289 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 7/193 (4%) Strand=Plus/Plus Query 14116 AATATTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTA---AGCTATACA 14169 ||| | | || |||||| || ||| | || ||| ||| | ||| || | ||||| Sbjct 3675306 AATCTACTTTTTCTTTATTAAAACTTTATATATATATATGA-TAAATATTTACCTATAAG 3675364 Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACC 14229 ||||||| ||||| ||||| || || || ||||||||||| || ||||| ||||| | Sbjct 3675365 TTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAA 3675424 Query 14230 ATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 ||||||||| || |||||| || | |||||||| || ||||||||| || | Sbjct 3675425 TTTGTACTTCAGACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATCAGATGCAG 3675484 Query 14290 CAAAAAATGCCAA 14302 ||||||||||||| Sbjct 3675485 CAAAAAATGCCAA 3675497 >seq6 Length=3602379 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/210 (69%), Gaps = 13/210 (6%) Strand=Plus/Minus Query 13906 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 13965 |||| | ||| |||||||||||||| ||| ||||||| || ||||||||| || | Sbjct 705939 TAATCAATTCATTTGAAAATGTTAAACCTTGCATCAAAGATCTCTTTTTTAACAAACTGA 705880 Query 13966 TTGCAGCAAA--TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCG 14023 || | ||| | | | ||||| |||| | |||| ||| | | |||| || || Sbjct 705879 TTATACGAAAACTTCCACTGAAAA--ATATACTTTCAAATGCTACGAGTGCTACTAGACG 705822 Query 14024 TTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttttttt 14083 || | |||| ||| | ||| ||||||||| ||||||||| | || ||||| Sbjct 705821 TTTTTCAAATGATTCATTT---------ATCCATTTTAAAGCCCATTCTGCCTTCTTTTT 705771 Query 14084 AATAAAATCCATTGTTTCAATAGCATTAAA 14113 || | | ||||||||||| |||||||| Sbjct 705770 AACACATGGGATTGTTTCAATTGCATTAAA 705741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727754139400