Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2 147 2e-30 seq6 82.4 7e-11 >seq2 Length=8484197 Score = 147 bits (162), Expect = 2e-30 Identities = 349/519 (67%), Gaps = 15/519 (3%) Strand=Plus/Minus Query 13392 TTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGT 13451 ||| |||||||| | ||| | || | || || ||||||| | ||||| ||||||| Sbjct 2357111 TTCGAAAAAGTTTGATTTTCTTTGTAAAGAAATCATTTCCATCCATTCGAAAGGATTTGA 2357052 Query 13452 TGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAAT 13511 || | || | || | |||||| | | ||| | ||||||| ||||||||| Sbjct 2357051 AGAGTTGAAAATCTTTTTGTAACCTAAAGAAACCACTAAACGATCAGCACAAAACTCAAT 2356992 Query 13512 ATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAA 13571 |||||||||||| || | |||||||| |||| | || || | | ||| | || Sbjct 2356991 GTATTGAGACATTGAACGCGAGTTCATACCAATTAAATCCACTGGTAATG-ATTCGCAAA 2356933 Query 13572 A-AATTCTTTTTCTATAGAC-ACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAA 13629 ||||| ||||| | | | ||||| || |||| || ||| ||| | | || || Sbjct 2356932 TGAATTCCTTTTC-ACATTCGACAGCATCTCTTATCATTTTCTCAATGACTT--TTGGAT 2356876 Query 13630 GGAGGATATTTTAGA----TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTC 13685 | | ||| | ||| || | | | ||| || ||||||||||| | || || Sbjct 2356875 CCAACTTTCTTTGTAACTTTGTGTAGAGA--AGACATGCGAAATCACAATGTAAACCTTC 2356818 Query 13686 ATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAA 13745 || | ||| | ||| |||||||||||||| ||| |||| || |||| ||||| || Sbjct 2356817 GTCACGTGAAATTAATTCATTTGAAAATGTTAAACCTTGCATTAAACCTCTCTTTTTCAA 2356758 Query 13746 CCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 13805 ||||||||||| | || ||| || ||||| ||||||||||| ||||| || | Sbjct 2356757 CCAAAATATTGAACAAAAACTTCCACTGAAAAATATACCCTCAACTGCTGCAAATGCAAC 2356698 Query 13806 TAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAttt 13865 | |||||| |||| || || | || ||||||| || |||||||| | || Sbjct 2356697 CAAACGTTCTGCAAATGAATCTGAATCATT---TATCCATCTTAATGCCCATTCTGCCTT 2356641 Query 13866 ttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 ||||||||| | |||||||| |||||||| ||||| Sbjct 2356640 CTTTTTAATACATGGAATTGTTTCAATTGCATTAAATAA 2356602 Score = 147 bits (162), Expect = 2e-30 Identities = 349/519 (67%), Gaps = 15/519 (3%) Strand=Plus/Plus Query 13392 TTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGT 13451 ||| |||||||| | ||| | || | || || ||||||| | ||||| ||||||| Sbjct 3674675 TTCGAAAAAGTTTGATTTTCTTTGTAAAGAAATCATTTCCATCCATTCGAAAGGATTTGA 3674734 Query 13452 TGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAAT 13511 || | || | || | |||||| | | ||| | ||||||| ||||||||| Sbjct 3674735 AGAGTTGAAAATCTTTTTGTAACCTAAAGAAACCACTAAACGATCAGCACAAAACTCAAT 3674794 Query 13512 ATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAA 13571 |||||||||||| || | |||||||| |||| | || || | | ||| | || Sbjct 3674795 GTATTGAGACATTGAACGCGAGTTCATACCAATTAAATCCACTGGTAATG-ATTCGCAAA 3674853 Query 13572 A-AATTCTTTTTCTATAGAC-ACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAA 13629 ||||| ||||| | | | ||||| || |||| || ||| ||| | | || || Sbjct 3674854 TGAATTCCTTTTC-ACATTCGACAGCATCTCTTATCATTTTCTCAATGACTT--TTGGAT 3674910 Query 13630 GGAGGATATTTTAGA----TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTC 13685 | | ||| | ||| || | | | ||| || ||||||||||| | || || Sbjct 3674911 CCAACTTTCTTTGTAACTTTGTGTAGAGA--AGACATGCGAAATCACAATGTAAACCTTC 3674968 Query 13686 ATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAA 13745 || | ||| | ||| |||||||||||||| ||| |||| || |||| ||||| || Sbjct 3674969 GTCACGTGAAATTAATTCATTTGAAAATGTTAAACCTTGCATTAAACCTCTCTTTTTCAA 3675028 Query 13746 CCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 13805 ||||||||||| | || ||| || ||||| ||||||||||| ||||| || | Sbjct 3675029 CCAAAATATTGAACAAAAACTTCCACTGAAAAATATACCCTCAACTGCTGCAAATGCAAC 3675088 Query 13806 TAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAttt 13865 | |||||| |||| || || | || ||||||| || |||||||| | || Sbjct 3675089 CAAACGTTCTGCAAATGAATCTGAATCATT---TATCCATCTTAATGCCCATTCTGCCTT 3675145 Query 13866 ttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 ||||||||| | |||||||| |||||||| ||||| Sbjct 3675146 CTTTTTAATACATGGAATTGTTTCAATTGCATTAAATAA 3675184 Score = 125 bits (138), Expect = 7e-24 Identities = 145/193 (75%), Gaps = 7/193 (4%) Strand=Plus/Minus Query 13904 AATGTTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTA---AGCTATACA 13957 ||| | | || |||||| || ||| | || ||| ||| | ||| || | ||||| Sbjct 2356480 AATCTACTTTTTCTTTATTAAAACTTTATATATATATATGA-TAAATATTTACCTATAAG 2356422 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017 ||||||| ||||| ||||| || || || ||||||||||| |||||||| ||||||| Sbjct 2356421 TTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAA 2356362 Query 14018 ATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077 |||||| || || |||||| ||| | ||||||||| |||||||||||| || | Sbjct 2356361 TTTGTACTTCAGACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATCAGATGCAG 2356302 Query 14078 CAAAAAATGCCAA 14090 ||||||||||||| Sbjct 2356301 CAAAAAATGCCAA 2356289 Score = 125 bits (138), Expect = 7e-24 Identities = 145/193 (75%), Gaps = 7/193 (4%) Strand=Plus/Plus Query 13904 AATGTTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTA---AGCTATACA 13957 ||| | | || |||||| || ||| | || ||| ||| | ||| || | ||||| Sbjct 3675306 AATCTACTTTTTCTTTATTAAAACTTTATATATATATATGA-TAAATATTTACCTATAAG 3675364 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017 ||||||| ||||| ||||| || || || ||||||||||| |||||||| ||||||| Sbjct 3675365 TTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAA 3675424 Query 14018 ATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077 |||||| || || |||||| ||| | ||||||||| |||||||||||| || | Sbjct 3675425 TTTGTACTTCAGACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATCAGATGCAG 3675484 Query 14078 CAAAAAATGCCAA 14090 ||||||||||||| Sbjct 3675485 CAAAAAATGCCAA 3675497 >seq6 Length=3602379 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/208 (68%), Gaps = 9/208 (4%) Strand=Plus/Minus Query 13694 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 13753 |||| | ||| |||||||||||||| ||| ||||||| || ||||||||| || | Sbjct 705939 TAATCAATTCATTTGAAAATGTTAAACCTTGCATCAAAGATCTCTTTTTTAACAAACTGA 705880 Query 13754 TTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTT 13813 || | || ||| || ||||| | |||| ||| | | |||| ||| |||| Sbjct 705879 TTATACGAAAACTTCCACTGAAAAATATACTTTCAAATGCTACGAGTGCTACTAGACGTT 705820 Query 13814 CTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 13873 | |||| ||| | || |||||||||| ||||||||| | || ||||||| Sbjct 705819 TTTCAAATGATTCATT---------TATCCATTTTAAAGCCCATTCTGCCTTCTTTTTAA 705769 Query 13874 TAAAATCCATTGTTTCGATTGCATTGAA 13901 | | |||||||| |||||||| || Sbjct 705768 CACATGGGATTGTTTCAATTGCATTAAA 705741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588554723240