Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 seq6 120 2e-22 seq3 113 3e-20 seq5 105 5e-18 seq2 91.5 1e-13 >seq1 Length=4923596 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || ||||| | ||| |||||||| | ||||||||| || || ||||| | Sbjct 2811525 TCTTAATACTAAATGAAGAGTTGATTCCTTTTGAATATTGTAATCTGATAAAGTACGGCC 2811466 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || |||||||| ||||||||||| |||| |||||||| | || | ||||||||| Sbjct 2811465 ATCTTCTAATTGTTTACCGGCAAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTT 2811406 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || || |||| || | ||| | || | | || || |||| ||||| Sbjct 2811405 ATCTTGAATTTTAGCTTTAACATTCTCAATATTATCAGAACCTTCAACTTCTAATGTTAT 2811346 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATTTTATT 43124 ||||| || || |||||||| ||||||||||||||| | |||| |||| Sbjct 2811345 TGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCATTCTGGAAATTATATT 2811295 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || ||||||| ||| || ||||| | ||||||||| || || ||||| | Sbjct 2812209 TCTTAAAACTAAATGGAGAGTAGATTCTTTTTGAATATTGTAATCTGATAAAGTACGACC 2812150 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || |||||||| ||||||||||| |||| |||||||| | || | ||||||||| Sbjct 2812149 ATCTTCTAATTGTTTACCGGCAAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTT 2812090 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || |||| |||| || | ||| | || | | || || |||| ||||| Sbjct 2812089 ATCTTGGATCTTGGCTTTAACATTTTCAATGTTATCAGAACCTTCAACTTCTAATGTTAT 2812030 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || |||||||| ||||| |||||||| Sbjct 2812029 TGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 2811994 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 ||||||||||||||| | ||| |||||||| | ||| ||||| || || ||||| | Sbjct 2811753 TCTTAACACCAAATGAAGAGTTGATTCCTTTTGAATATTATAATCTGATAAAGTACGACC 2811694 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || |||||||| || || ||||| | || |||||||| | || | ||||||||| Sbjct 2811693 ATCTTCTAATTGTTTACCTGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTT 2811634 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || ||| |||| || | | | | || | | || || |||| || || Sbjct 2811633 ATCTTGGATTTTAGCTTTAACATTCTCGATATTATCAGAACCTTCAACCTCTAAAGTGAT 2811574 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||| || || |||||||| |||||||||||||| Sbjct 2811573 AGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 2811538 >seq6 Length=3602379 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || ||||| | ||| || ||||| | ||||||||| || | ||||| | Sbjct 961706 TCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTGTAATCTGAAAGAGTACGACC 961647 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || |||||||| || |||||||| | || |||||||| | || | ||||||||| Sbjct 961646 ATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTT 961587 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || || |||| || | ||| |||||| | | ||||| |||| || || Sbjct 961586 ATCTTGAATTTTGGCTTTAACATTTTCAATGTTGTCGCTACCTTCGACTTCTAATGTGAT 961527 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||| || || |||||||| |||||||||||||| Sbjct 961526 AGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 961491 Score = 102 bits (112), Expect = 6e-17 Identities = 162/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || ||||| | ||| || ||||| | ||| || || || | ||||| | Sbjct 961250 TCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAGTCTGAAAGAGTACGACC 961191 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || |||||||| || || ||||| |||| |||||||| | || | ||||||||| Sbjct 961190 ATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGGGGAATACCTTCTTT 961131 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || ||| |||| || | ||| | || | | || || |||| || || Sbjct 961130 ATCTTGAATCTTGGCTTTAACATTTTCAATATTATCTGAACCTTCAACTTCTAAGGTGAT 961071 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATTTTATT 43124 |||||| || || |||||||| ||||||||||||| || ||||| ||||| Sbjct 961070 AGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCA-TTCCTTAAAATTATT 961021 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || ||||| | ||| || ||||| | ||| ||||| || | ||||| | Sbjct 961478 TCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGAGAGAGTACGACC 961419 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || |||||||| || || ||||| |||| |||||||| | || | ||||||||| Sbjct 961418 ATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGGGGAATACCTTCTTT 961359 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || || |||| || | ||| |||| | | | ||||| |||| || || Sbjct 961358 ATCTTGAATTTTGGCTTTAACATTTTCAATATTGTCACTACCTTCGACTTCTAATGTGAT 961299 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || |||||||| || ||||||||||| Sbjct 961298 GGTTTTACCAGTAAGAGTTTTGACGAAAATTTGCAT 961263 >seq3 Length=6357299 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || |||||| || ||||| | ||| |||||||| | ||| ||||| || Sbjct 2331835 CCACCTCTCAATCTTAATACTAAATGAAGAGTTGATTCCTTTTGAATATTATAATCTGAT 2331776 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || |||||||| || |||||||| |||| ||||| || | || Sbjct 2331775 AAAGTACGACCATCTTCTAATTGTTTACCTGCAAAAATTAATCTTTGTTGGTCTGGTGGG 2331716 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| |||| || | ||| | || | | || || Sbjct 2331715 ATACCTTCTTTATCTTGGATTTTAGCTTTTACATTTTCAATGTTATCAGAACCTTCAACT 2331656 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || |||||||| || |||||||| |||||||||||||| Sbjct 2331655 TCTAATGTGATGGTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCAT 2331609 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||||| |||| |||||||| | |||||||| || | ||||| | || ||| Sbjct 5640891 ACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTACGACCATCCTCC 5640832 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| ||||| ||||| | || |||||||| | || | ||||||||| || | Sbjct 5640831 AATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 5640772 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | ||| | || | | || || || | || ||||| || Sbjct 5640771 ATTTTGGCTTTAACATTCTCAATGTTATCAGAACCTTCAACTTCGAGTGTAATAGTCTTA 5640712 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || ||||| |||||||||||||| Sbjct 5640711 CCAGTGAGGGTTTTGACAAAAATTTGCAT 5640683 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || || |||| |||| |||||||| | || || ||||| | ||||| | Sbjct 5879246 TCTTAAAACTAAGTGGAGAGTGGATTCCTTTTGAATGTTATAGTCGGAAAGAGTACGACC 5879305 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || |||||||| || || ||||| | || |||||||| | || | ||||||||| Sbjct 5879306 ATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTT 5879365 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || |||| |||| || | ||| | || | | || || |||| || || Sbjct 5879366 ATCTTGGATCTTGGCTTTAACATTTTCAATGTTATCAGAACCTTCAACTTCTAAAGTGAT 5879425 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || || |||||||| |||||||||||||| Sbjct 5879426 GGTCTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 5879461 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| ||||| |||| |||| |||||||| | || || || || | ||||| | Sbjct 5879474 TCTTAATACCAAGTGGAGAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGAGTACGACC 5879533 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || |||||||| || || ||||| |||| ||||| || | || | ||||||||| Sbjct 5879534 ATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTT 5879593 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || ||| |||| || | ||| | || | | || || |||| || || Sbjct 5879594 ATCTTGAATCTTGGCTTTTACATTTTCAATATTATCAGAACCTTCAACTTCTAAAGTGAT 5879653 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATTTTATTT 43125 || || || |||| ||||| ||||||||||||||| ||||||| ||| Sbjct 5879654 GGTCTTACCAGTTAATGTTTTAACAAAAATTTGCATT---ATAATTTTTTTT 5879702 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||||| || |||||||| | |||||||| || | ||||| | || || Sbjct 5641119 ACTAAATGGAGTGTTGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCT 5641060 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| ||||| ||||| | || |||||||| | || | ||||||||| || Sbjct 5641059 AATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGA 5641000 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || ||| || | ||| |||| | | | || || || | || || ||||| Sbjct 5640999 ATTTTTGTTTTTACATTCTCAATGTTGTCACTACCTTCAACTTCGAGTGTAATGGTTTTA 5640940 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || |||||||| |||||||||||||| Sbjct 5640939 CCAGTGAGAGTTTTTACAAAAATTTGCAT 5640911 >seq5 Length=5125352 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || ||||||| |||| || ||||| | ||||| || || | ||||| | Sbjct 2812101 TCTTAAAACTAAATGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACC 2812042 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || |||||||| || || ||||| |||| |||||||| | || | ||||||||| Sbjct 2812041 ATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGGATACCTTCTTT 2811982 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || ||| ||||||| | ||| | || | | | || || |||| || || Sbjct 2811981 GTCTTGGATTTTGGCTTTGACATTTTCAATGTTATCACTACCTTCAACCTCTAAGGTGAT 2811922 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || || |||||||| |||||||||||||| Sbjct 2811921 GGTCTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 2811886 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||||| |||| |||||||| | |||||||| || | ||||| | || || Sbjct 2811410 ACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCT 2811351 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || ||||| || |||| |||||||| | || | ||||||||| || Sbjct 2811350 AATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGA 2811291 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || | ||||| | ||| |||| | | | || || || | || || ||||| Sbjct 2811290 ATTTTAGCCTTGACATTTTCAATGTTGTCACTACCTTCAACTTCCAATGTGATGGTTTTA 2811231 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || |||||||| |||||||||||||| Sbjct 2811230 CCAGTGAGAGTTTTAACAAAAATTTGCAT 2811202 >seq2 Length=8484197 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || || |||| ||| || ||||| | |||||||||||| | ||||| | Sbjct 7199021 TCTTAAGACTAAGTGGAGAGTTGATTCTTTTTGGATATTGTAATCGGAAAGAGTACGACC 7199080 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 ||| || |||||||| |||||||| || |||| |||||||| | || | ||||||||| Sbjct 7199081 GTCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGATCTGGTGGGATACCTTCTTT 7199140 Query 43014 TTC 43016 || Sbjct 7199141 ATC 7199143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369409434378