Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 196 6e-45 seq2 118 1e-21 seq6 86.0 8e-12 >seq4 Length=5450249 Score = 196 bits (216), Expect = 6e-45 Identities = 602/917 (66%), Gaps = 13/917 (1%) Strand=Plus/Minus Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 ||| || |||||||||||||| | |||| | | ||||| || || || || || Sbjct 1505007 AGAGGCAAGATTACAAACGGCGATTTCATCTGGTGATGTGTATTGAATGATCTCGGTACA 1504948 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 ||||||||||| | ||||| |||||||| | |||||| || ||||| ||||| Sbjct 1504947 AAGATTACTACTACTAATGGTACCTAAATTCTTTTGATTGGATTTAGCATTACAGGCATC 1504888 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 ||| || | ||| || |||||||||||||||| ||||| || ||||| || ||| | Sbjct 1504887 CTTGTACAAAATGAATGGAGTACCAGTTTCAACTTGAGACTCCATAATGGCGAACCAAAG 1504828 Query 71883 GACTCGAGCCTTTATTATAT-TCTTGT-ATCTCTTTTCTCT-TTCGTATTGTGTATATAA 71939 || |||| || || | | ||||| | || | | |||||||| ||| | Sbjct 1504827 TTCTTGAGCTTTAATGACACGTCTTGGGAGGTCAGGTGTTGCTTCGTATTTCAAATAGAG 1504768 Query 71940 TCGTTCGAACT-CGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCA 71998 | ||| | | ||| || | | | || || |||||| ||||| | | Sbjct 1504767 A-GCACGATGTTCCTCTGAGTGAGTTTCAGCAAGACCTGGTGCTTCATTTGGACAAAAGA 1504709 Query 71999 ATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 72058 | ||| || |||| | | || |||| |||||| | |||| || ||||||||| | Sbjct 1504708 GGGCCCAATCGCCATTTTGTTCGACACGTTCCATAAAAATATCACTAACCCAAAGAGC-A 1504650 Query 72059 TA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 72117 || ||||||||||| | ||| ||| || || || || || || || ||||| | || Sbjct 1504649 TAGAATAGATCTCTAGCTCTCATCTCTTCCTTACCAGTGTTTTTCTTTAGATCAATAAAT 1504590 Query 72118 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTT 72177 | | | ||||| ||||| ||||||||||| | ||| | | ||| | ||| Sbjct 1504589 TCAAAGACATCAGCGTGCCATGGTTCCAAGTAAACGGCAAAGGCACCCTTTCTCTTGCCA 1504530 Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | ||| | ||| || | ||| |||| | | |||||| | | |||| Sbjct 1504529 CCACCTTGATCGACGTAACGAGCAGTATCATTGAAAACACGAAGCATTGGCACCAAACCA 1504470 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||| || ||||||||| || ||||| ||| | |||||||| || || || Sbjct 1504469 TTGCTTGTACCATTGGTACCACGAATATAACTTTGAGCAGCACGAATCTTATGAACTGCA 1504410 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| || || || || | || || || | ||| ||| |||| || || ||||| || Sbjct 1504409 ATACCAATACCACCGGCACTCTTTGAAATGAGTGCACATTGTTTCAAAGTGTCATAAATA 1504350 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGAC 72415 || || || ||| ||| |||| | || | ||||| |||||| |||||| | Sbjct 1504349 CCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACAAGATGACATTTGTGGTGATG-- 1504292 Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 || || || || |||| || || | || || || ||| |||| ||||||| | | Sbjct 1504291 GTGTACCTGCGTTGAATAGAGTTGGTGTGGCATGAGTGAACAATTTCTCAGACAAACGTT 1504232 Query 72476 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535 |||| || | || || ||||| | || ||| || || | | ||||||||| | Sbjct 1504231 TGTAGGTGTTGATGGCAGATTCGAGGTCTTCGCCATGGATACCAATGGAGACACGCATCA 1504172 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG-TAGGATTTTTCC 72594 |||| || || || | || || || || ||| | | | ||| ||||| |||| Sbjct 1504171 ACATGTGTTGTGGACGCTCGACAATTTTACCATTGA-TACGATGAAGATAGGAACGTTCC 1504113 Query 72595 AAAGTTTTAAAACCAAA 72611 || ||||| || ||||| Sbjct 1504112 AATGTTTTGAATCCAAA 1504096 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 ||||| ||||||||||| || || |||| ||| ||||| ||| |||||||| Sbjct 1505912 GTACGAAGATAGTACATACCAGTCTTTAAACCTTTCTTCCATGAGTAGAAATGCATTGAG 1505853 Query 70891 GTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATG 70950 || ||||| | | || | || || || ||| || ||| | ||||||||||||||| Sbjct 1505852 GTGAGTTTAGCAAAGGTTGGTTCAGCAATGAAAACATTGAAACTTTGACTTTGATCGATG 1505793 Query 70951 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 71010 || || || | || |||||||| | |||| || |||| | |||||||||| ||| Sbjct 1505792 AAAGCACCACGATCAGCAGCCATATCGATGAGAGTTCTTTGACGGATTTCCCAAACTGTT 1505733 Query 71011 TTATA 71015 ||||| Sbjct 1505732 TTATA 1505728 >seq2 Length=8484197 Score = 118 bits (130), Expect = 1e-21 Identities = 206/295 (70%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 |||||||||||| || || | ||| || || | ||||||||| || ||||| || | Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || |||||| || | |||||| | ||||||||| || ||| |||| || || Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 2356725 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG--TCATGT 42241 || || || ||||| ||||| |||| | | ||| | || | ||| |||| | Sbjct 2356724 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGC--AAATGAATCTGAATCATTT 2356667 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| || ||||| || ||||||||||| | ||| || || ||||| || |||||| Sbjct 2356666 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 2356607 Query 42302 AAGAGATAGtttttttCATTAC-TATCTTTAACATATGTATCGATCAAAAGACTA 42355 || | || | ||| || | ||||||||| ||| || || || ||||||||| Sbjct 2356606 AATA-ATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 2356553 Score = 118 bits (130), Expect = 1e-21 Identities = 206/295 (70%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 |||||||||||| || || | ||| || || | ||||||||| || ||||| || | Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || |||||| || | |||||| | ||||||||| || ||| |||| || || Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 3675061 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG--TCATGT 42241 || || || ||||| ||||| |||| | | ||| | || | ||| |||| | Sbjct 3675062 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGC--AAATGAATCTGAATCATTT 3675119 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| || ||||| || ||||||||||| | ||| || || ||||| || |||||| Sbjct 3675120 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 3675179 Query 42302 AAGAGATAGtttttttCATTAC-TATCTTTAACATATGTATCGATCAAAAGACTA 42355 || | || | ||| || | ||||||||| ||| || || || ||||||||| Sbjct 3675180 AATA-ATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 3675233 Score = 95.1 bits (104), Expect = 2e-14 Identities = 134/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 ||||| |||| ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 2356428 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 2356369 Query 42413 TCGGTAACCTGTACTTCTGTACA-AAATC--GTTCAGCTAAATTTTCGTTCACTATTCCG 42469 || | || |||||||| | ||| ||||| ||| || | ||||| || || || || Sbjct 2356368 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTT--GCAAGGTTTTCATTTACAATACCA 2356312 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT 42529 ||| || |||||||| ||||| |||||| || |||| ||| | ||||||| Sbjct 2356311 TCAGATGCAGCAAAAAATGCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAAT 2356252 Query 42530 TTAT 42533 |||| Sbjct 2356251 TTAT 2356248 Score = 95.1 bits (104), Expect = 2e-14 Identities = 134/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 ||||| |||| ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 3675358 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 3675417 Query 42413 TCGGTAACCTGTACTTCTGTACA-AAATC--GTTCAGCTAAATTTTCGTTCACTATTCCG 42469 || | || |||||||| | ||| ||||| ||| || | ||||| || || || || Sbjct 3675418 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTT--GCAAGGTTTTCATTTACAATACCA 3675474 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT 42529 ||| || |||||||| ||||| |||||| || |||| ||| | ||||||| Sbjct 3675475 TCAGATGCAGCAAAAAATGCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAAT 3675534 Query 42530 TTAT 42533 |||| Sbjct 3675535 TTAT 3675538 >seq6 Length=3602379 Score = 86.0 bits (94), Expect = 8e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 |||| |||||| ||| |||||| || ||||||||||| ||||| || || ||||| || Sbjct 705808 TCATTTATCCATTTTAAAGCCCATTCTGCCTTCTTTTTAACACATGGGATTGTTTCAATT 705749 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 |||||||| || | | ||| ||| |||| |||| | | || || || ||||||||| Sbjct 705748 GCATTAAAAAGTTTATCTTTAATATTTTTATCCTTAATACAAGTTTCAATTAAAAGACTA 705689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138856041160