Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 2e-15 seq3 86.0 4e-12 seq5 84.2 1e-11 seq4 82.4 5e-11 >seq6 Length=3602379 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | || || ||||| | || || |||||||| ||||| |||||||| Sbjct 961490 ACCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGA 961431 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || ||||| || ||| || ||||| | ||| || || | ||| Sbjct 961430 GAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGGGG 961371 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || ||| ||| || ||| ||| |||| | || || Sbjct 961370 AATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATATTGTCACTACCTTCGAC 961311 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | || || ||||| || ||||||||||| |||||||||||||| Sbjct 961310 TTCTAATGTGATGGTTTTACCAGTAAGAGTTTTGACGAAAATTTGCAT 961263 Score = 91.5 bits (100), Expect = 9e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | || || ||||| | || || |||||||| ||||||||||| || Sbjct 961718 ACCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTGTAATCTGA 961659 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || ||||| || ||| ||| || | |||||| || || | || Sbjct 961658 AAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGG 961599 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || ||| ||| || ||| ||| ||||| | || || Sbjct 961598 AATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTGTCGCTACCTTCGAC 961539 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | || || ||||| || || |||||||| || ||||||||||| Sbjct 961538 TTCTAATGTGATAGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 961491 >seq3 Length=6357299 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||||||| | | || ||||| | ||| || || ||||| || ||||||||||| Sbjct 5641137 CCACCTCTTAATCTGAGAACTAAATGGAGTGTTGATTCCTTTTGAATGTTGTAATCAGAA 5641078 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | | || || ||||| || || || || | |||||| || || | || Sbjct 5641077 AGAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGG 5641018 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || |||||||| || ||| |||||| | | ||| |||| | || ||| Sbjct 5641017 ATACCTTCTTTGTCTTGAATTTTTGTTTTTACATTCTCAATGTTGTCACTACCTTCAACT 5640958 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || ||||| || || ||||||||||| ||||||||||| Sbjct 5640957 TCGAGTGTAATGGTTTTACCAGTGAGAGTTTTTACAAAAATTTGCAT 5640911 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | | ||||| || | || || |||||||| |||||||||||||| Sbjct 5640454 ACCACCTCTTAATCTGAGGACCAAGTGGAGAGTTGATTCTTTTTGGATATTGTAATCAGA 5640395 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || ||||| || ||| || || | |||||| || || | || Sbjct 5640394 GAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGG 5640335 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || |||| |||||| | | ||| |||| | || ||| Sbjct 5640334 AATACCTTCTTTATCTTGAATCTTTGTTTTTACATTCTCAATGTTGTCACTACCTTCAAC 5640275 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || || || || || ||||| || |||||||| Sbjct 5640274 TTCGAGTGTAATAGTCTTACCGGTGAGGGTCTTTACAAAGATTTGCAT 5640227 >seq5 Length=5125352 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | | || ||||| | || || || ||||| || ||||||||||| Sbjct 2811429 ACCACCTCTTAATCTAAGAACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGA 2811370 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || ||||| || ||| ||| ||||| | ||| || || | || Sbjct 2811369 AAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGTGG 2811310 Query 33262 TATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || || | ||| || || ||| ||| |||| | || Sbjct 2811309 AATACCTTCTTTGTCTTGAATTTTAGCC---TTGACATTTTCAATGTTGTCACTACCTTC 2811253 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| |||| || || ||||| || || |||||||| || ||||||||||| Sbjct 2811252 AACTTCCAATGTGATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 2811202 >seq4 Length=5450249 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | || || || || | || || |||||||| |||||||||||||| Sbjct 5083937 ACCACCTCTTAATCTTAAAACTAAGTGGAGAGTTGATTCTTTTTGAATATTGTAATCAGA 5083996 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || ||||| || ||| ||| || | |||||| || || | || Sbjct 5083997 GAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGG 5084056 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || ||| ||| || ||| ||| | || || ||| Sbjct 5084057 AATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATATTATCAGATCCTTCAAC 5084116 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| || || ||||| || || |||||||| || || |||||||| Sbjct 5084117 CTCCAAGGTGATAGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 5084164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777440710818