Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 >seq2 Length=8484197 Score = 104 bits (114), Expect = 2e-17 Identities = 200/292 (68%), Gaps = 11/292 (4%) Strand=Plus/Minus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 |||||| |||||||| || || ||||| || | |||| || ||||||||||||| Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaa 13269 ||| |||| | |||| ||||| | ||||||||| | | ||| || ||||| Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 2356725 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTC-T 13328 ||| || |||||||||||||| || | ||| | ||| || | | | | | | || | Sbjct 2356724 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAATG----AATCTGAATCAT 2356669 Query 13329 CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGT 13388 |||||| || ||||| | ||| || | ||||| || || |||| ||||| | Sbjct 2356668 TTATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCAT 2356609 Query 13389 TAAATAAATAAtttt---tttCCTTACTGTCTAAAATATAAGTATCTATCAA 13437 ||||||| | || || ||| |||| ||| ||||||||| || || || Sbjct 2356608 TAAATAATTTATCTTTAGTTTGCTTA---TCTTTAATATAAGTTTCAATTAA 2356560 Score = 104 bits (114), Expect = 2e-17 Identities = 200/292 (68%), Gaps = 11/292 (4%) Strand=Plus/Plus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 |||||| |||||||| || || ||||| || | |||| || ||||||||||||| Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaa 13269 ||| |||| | |||| ||||| | ||||||||| | | ||| || ||||| Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 3675061 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTC-T 13328 ||| || |||||||||||||| || | ||| | ||| || | | | | | | || | Sbjct 3675062 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAATG----AATCTGAATCAT 3675117 Query 13329 CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGT 13388 |||||| || ||||| | ||| || | ||||| || || |||| ||||| | Sbjct 3675118 TTATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCAT 3675177 Query 13389 TAAATAAATAAtttt---tttCCTTACTGTCTAAAATATAAGTATCTATCAA 13437 ||||||| | || || ||| |||| ||| ||||||||| || || || Sbjct 3675178 TAAATAATTTATCTTTAGTTTGCTTA---TCTTTAATATAAGTTTCAATTAA 3675226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982184643482