Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 3e-15 seq5 84.2 2e-11 >seq3 Length=6357299 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 |||||||| ||||| |||||||||||||||||||||| || || || | || || Sbjct 5641119 ACTAAATGGAGTGTTGATTCCTTTTGAATGTTGTAATCAGA-AAGAGTACGACCATCTTC 5641061 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 | || |||||| || |||| | ||| || ||||| || | || ||| ||||| Sbjct 5641060 TAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTG 5641001 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| || | | | | ||| | || || || |||| ||| |||||||| Sbjct 5641000 AATTTTTGTTTTTACATTCTCAATGTTGTCACTACCTTCAACTTCGAGTGTAATGGTTTT 5640941 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| ||||||||||| |||||||| ||||| Sbjct 5640940 ACCAGTGAGAGTTTTTACAAAAATTTGCAT 5640911 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 |||||||| || ||| |||||||||||||||||||||| | || | |||||| Sbjct 5640891 ACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTACGACCATCCTCC 5640832 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | || |||||| || |||| | ||| || ||||| || | || ||| ||||| Sbjct 5640831 AATTGTTTACCGGCGAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 5640772 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| || | | | | ||| |||| | | || |||| ||| || || ||| Sbjct 5640771 ATTTTGGCTTTAACATTCTCAATGTTATCAGAACCTTCAACTTCGAGTGTAATAGTCTTA 5640712 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| ||||| |||||||| ||||| Sbjct 5640711 CCAGTGAGGGTTTTGACAAAAATTTGCAT 5640683 >seq5 Length=5125352 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 |||||||| || ||| |||||||||||||||||||||| || || || | || || Sbjct 2811410 ACTAAATGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGA-AAGAGTACGACCATCTTC 2811352 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 | || ||||| | | ||||| | || ||||| || | || ||| ||||| Sbjct 2811351 TAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTG 2811292 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| ||||| | | ||| | || || || || | ||| |||||||| Sbjct 2811291 AATTTTAGCCTTGACATTTTCAATGTTGTCACTACCTTCAACTTCCAATGTGATGGTTTT 2811232 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| ||||||||||| |||||||| ||||| Sbjct 2811231 ACCAGTGAGAGTTTTAACAAAAATTTGCAT 2811202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250989506041