Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq2 176 5e-39 seq5 114 2e-20 >seq2 Length=8484197 Score = 176 bits (194), Expect = 5e-39 Identities = 427/633 (67%), Gaps = 29/633 (5%) Strand=Plus/Plus Query 164378 CAAATGTTCAATTAA-ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAA 164436 ||||| |||| || | ||||| |||| ||| | ||||| | ||||| | ||| ||| Sbjct 6319512 CAAATTTTCACTTCAGATTGGGATTTCGAAAATATGGGTATTGGTGGTTTGGATGCAGAG 6319571 Query 164437 TTTTCTCTTATTTTCAGACGAGCATTTGCTTCTAGATCAGTTCCTATC-GAAATAATaaa 164495 ||| |||||||||||| ||||| |||| | | |||| | | | ||| |||| Sbjct 6319572 TTTAGAGATATTTTCAGACGTGCATTCTCTTC-ACGTATTTTCCCACCAGCAATCGTAAA 6319630 Query 164496 aaaaTTAGGCTGT-AAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTA 164554 |||||||| ||| || ||| | ||||| || | ||| |||| || |||||| |||| Sbjct 6319631 GAAATTAGG-TGTCAATCATGTTAAAGGTATGCTTTTATATGGTCCACCTGGTACTGGTA 6319689 Query 164555 AAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTG 164611 |||| ||||| || || || | | ||| | |||||| || || || || ||| Sbjct 6319690 AAACTTTAATCGCCAGACAAATCGGT-AAGATGTTAAATGGCCGTGAACC--AAAGGTTG 6319746 Query 164612 TTAATGGTCC-TGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAG 164670 | |||||| | ||| || || |||||||| ||| | || |||| ||| |||||| | Sbjct 6319747 TCTCTGGTCCATCGATT-TTAAATAAATATGTCGGTCAATCCGAAGAGAATATTAGAATG 6319805 Query 164671 TTGTTTCAGGAGGCTGAAGAAGAACAAAAG--AAAGCAGGTTTAGCTAGTAAATTACATG 164728 || ||| || || || ||||||||| |||| ||| | | |||||| Sbjct 6319806 TTATTTAGAGATGCAGAGATTGAACAAAAGGCAAAG--GGTGATGATTCAGGTTTACATA 6319863 Query 164729 TTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGG----TGATAATATTATT 164784 |||| |||| ||||| | ||||| |||||||| |||||| || || ||| Sbjct 6319864 TTATCATTTTCGATGAATTGGATGCAATTTGCAAATCACGTGGCTCAAGACAAGGCGATT 6319923 Query 164785 CA--------TGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCT 164836 || |||| ||||||| ||||| || | | | || |||||||| ||||| | Sbjct 6319924 CAGGTGTTGGTGATTCAGTGGTAAATCAATTATTAGCAATGATTGATGGTGTCGAATCTT 6319983 Query 164837 TAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTAT 164896 ||||||| || || | | ||||||||||| || ||| | || ||||| |||||| Sbjct 6319984 TAAATAACATCTTGGTCATTGGTATGACCAATAGAAAGGATATGATCGATGAAGCTTTAC 6320043 Query 164897 TACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCC 164956 | || || ||||| |||||| | | | || || ||||||||| || | || | Sbjct 6320044 TTCGTCCAGGTCGTTTAGAAGTACACGTTGAGATCTCATTACCCGATGAACATGGTAGAG 6320103 Query 164957 TTCAAATTTTAAAAGTTCATGTGGCTAAAATGA 164989 ||||| || || ||||| |||||||||| Sbjct 6320104 AACAAATCTTTAAGATTCATACCGCTAAAATGA 6320136 >seq5 Length=5125352 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 19356 TACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGA 19415 ||||| |||| ||||||||||| ||||| | || ||||||||| || ||||||||| Sbjct 1297113 TACCTCAAATCGGTGATAAGTTCTCTTCTCGTCATGGTCAAAAAGGTACTTGTGGTATGG 1297054 Query 19416 TTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTA 19475 |||||||||||| ||| | || || ||| || ||||| || || ||| | ||| | | Sbjct 1297053 CTTATCGTCAAGAGGATTTACCATTCACTGTTGAAGGTATCGTTCCAGATATCATTGTAA 1296994 Query 19476 ACCCACATGCTTTTCCAAGTCGAATGAC 19503 | ||||||||| ||||| ||| ||||| Sbjct 1296993 ATCCACATGCTATTCCATCTCGTATGAC 1296966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871694615600