Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq4 277 3e-69 seq5 84.2 4e-11 >seq4 Length=5450249 Score = 277 bits (306), Expect = 3e-69 Identities = 403/563 (72%), Gaps = 10/563 (2%) Strand=Plus/Minus Query 193634 AGTTGAACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGA 193693 |||| | || |||| || |||||| | ||||| |||||||||||||||||||| ||||| Sbjct 2062759 AGTTAATCCAACTGAAATTTATAATTTAGGTGCACAAAGTCATGTTAAAGTTTCATTTGA 2062700 Query 193694 GATGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGT 193753 ||| |||| ||||| | ||||||||| |||||| |||| | || | || ||| | Sbjct 2062699 TATGTCAGAATATACAGGTGATGTTGATGGTTTAGGTTGTCTTCGTTTATTGGATGCAAT 2062640 Query 193754 TCGTATGTTG-GGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGT 193812 ||||| |||| || ||||||||| | ||| ||||| || || ||| ||| | | Sbjct 2062639 TCGTA-GTTGTGGTATGGAGAAAAAGGTTAAATATTATCAAGCTTCAACCTCTGAATTAT 2062581 Query 193813 ATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTT 193872 ||||| |||| || | ||||| |||||| ||||||||||| ||||||| || || | Sbjct 2062580 ATGGTAAAGTTCAAGAGATTCCACAATCAGAGACCACACCATTCTATCCACGTTCACCAT 2062521 Query 193873 ATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGAT 193932 | | ||| |||||| |||| ||||||||| | || ||||||||| | || | Sbjct 2062520 ACGCTGTCGCAAAGCAATATGCCTATTGGATCGTTGTAAACTATCGTGAGGCTTACGATA 2062461 Query 193933 TCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTG 193992 | | || || |||||| | |||||||| ||||| ||| | |||||| || |||| Sbjct 2062460 TGTATGCATGTAATGGTATCTTATTCAATCATGAATCACCACGTAGAGGTCCAACTTTTG 2062401 Query 193993 TAACTCGTAAGATTACACAAGGTT--TATCTAAGATCTCTGTTGGATTACAGA--AGATT 194048 ||||| | ||||| ||| | || | || || | ||| || ||| | ||| Sbjct 2062400 TAACTAGAAAGAT--CACTCGTTTCGTTGCTGGTATTGCATGTGG--TAGAGATGAAATT 2062345 Query 194049 CTTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAA 194108 || || | |||||| | || ||||| | |||||||| ||||| | ||||| |||||| Sbjct 2062344 CTCTACTTGGGTAATATCAACGCTAAACGTGATTGGGGTCACGCTAGAGATTACGTTGAA 2062285 Query 194109 GCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAA 194168 || |||||||||||||| ||||| || | || || |||| || ||||| || |||||| Sbjct 2062284 GCAATGTGGTTAATGTTACAACAAGAGAAGCCAGAAGATTTCGTTATTGCCACTGGTGAA 2062225 Query 194169 CAGTATTCTGTTAGAGACTTTGT 194191 |||| ||| | || ||||| Sbjct 2062224 ACTCATTCAGTTCGTGAATTTGT 2062202 >seq5 Length=5125352 Score = 84.2 bits (92), Expect = 4e-11 Identities = 117/161 (73%), Gaps = 10/161 (6%) Strand=Plus/Plus Query 144946 GAACCTATTTTAGTATCTGGAACTGATGGTGTAGGAACTAAAATTGATATTGCACAAGCC 145005 || || ||||||||||| || ||||||||||| || || ||| | | |||||||||| Sbjct 3684855 GATCCAATTTTAGTATCAGGTACTGATGGTGTTGGTACAAAATTAAAGATTGCACAAG-A 3684913 Query 145006 GCTAATGACT-ATACAACTATTGGTATAGATCTTGTTGCCATGTGTGTGAATGATATAAT 145064 || | | || | ||||||||| ||| | || || |||||||| |||||| || | Sbjct 3684914 ACTTGGAATTCATGATAGTATTGGTATTGATTTGGTAGCAATGTGTGTCAATGATGTAGT 3684973 Query 145065 AACCTGT----GGTGCGAAACCATTATACTTCTTAGATTAT 145101 ||| ||||| ||||||||| ||| ||||||||| Sbjct 3684974 ----TGTTCAAGGTGCAGAACCATTATTCTTTTTAGATTAT 3685010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807554786127960