Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2 183 3e-41 seq6 84.2 2e-11 >seq2 Length=8484197 Score = 183 bits (202), Expect = 3e-41 Identities = 189/245 (77%), Gaps = 7/245 (3%) Strand=Plus/Minus Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 |||||| ||||||||||| |||||||| || | ||||||||||| ||||||||||| Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCC--TGAAAAG 21592 ||| ||||||| ||||||||||| |||||||||||||| ||| ||| |||||| Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAA- 2356726 Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCC 21652 | || |||||||| || ||||||||||| || ||||| | || || ||| ||| Sbjct 2356725 -ATATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAAT---GAATCTGAATCA 2356670 Query 21653 AATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCT 21712 ||||||| || |||||||| |||||| | ||||||||| |||||| ||||| || Sbjct 2356669 TTTATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCA 2356610 Query 21713 TTTAA 21717 || || Sbjct 2356609 TTAAA 2356605 Score = 183 bits (202), Expect = 3e-41 Identities = 189/245 (77%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 |||||| ||||||||||| |||||||| || | ||||||||||| ||||||||||| Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAG 21592 ||| ||||||| ||||||||||| |||||||||||||| ||| | | |||||| Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAA-- 3675059 Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCC 21652 || || |||||||| || ||||||||||| || ||||| | || || ||| ||| Sbjct 3675060 AATATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGCAAAT---GAATCTGAATCA 3675116 Query 21653 AATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCT 21712 ||||||| || |||||||| |||||| | ||||||||| |||||| ||||| || Sbjct 3675117 TTTATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCA 3675176 Query 21713 TTTAA 21717 || || Sbjct 3675177 TTAAA 3675181 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 7/193 (4%) Strand=Plus/Minus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||| ||||||||||||||||||| || || || ||||| || || ||||||||||| Sbjct 2356428 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 2356369 Query 21827 TCTGAACATTGAACCTCGGAATAAAATC--GTTGAGCCAAGTTTTCATTTACTATTCCAT 21884 |||| | ||| || || || ||||| |||| | | |||||||||||| || |||| Sbjct 2356368 TCTGGAATTTGTACTTCAGACATAAATCTAGTTG--CAAGGTTTTCATTTACAATACCAT 2356311 Query 21885 CACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATT 21944 || || |||||||||||||| | || | || |||| ||||| ||||||||||||| Sbjct 2356310 CAGATGCAGCAAAAAATGCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAATT 2356251 Query 21945 T---TTTCCAATC 21954 | || |||||| Sbjct 2356250 TATATTCCCAATC 2356238 Score = 138 bits (152), Expect = 1e-27 Identities = 149/193 (77%), Gaps = 7/193 (4%) Strand=Plus/Plus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||| ||||||||||||||||||| || || || ||||| || || ||||||||||| Sbjct 3675358 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 3675417 Query 21827 TCTGAACATTGAACCTCGGA-ATAAA-ATCGTTGAGCCAAGTTTTCATTTACTATTCCAT 21884 |||| | ||| || || || ||||| | ||| || | |||||||||||| || |||| Sbjct 3675418 TCTGGAATTTGTACTTCAGACATAAATCTAGTT--GCAAGGTTTTCATTTACAATACCAT 3675475 Query 21885 CACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATT 21944 || || |||||||||||||| | || | || |||| ||||| ||||||||||||| Sbjct 3675476 CAGATGCAGCAAAAAATGCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAATT 3675535 Query 21945 T---TTTCCAATC 21954 | || |||||| Sbjct 3675536 TATATTCCCAATC 3675548 >seq6 Length=3602379 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/220 (70%), Gaps = 13/220 (6%) Strand=Plus/Minus Query 21512 ATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATT 21571 || |||||||| |||||||||||||| |||| || ||||||||||||| || ||| Sbjct 705937 ATCAATTCATTTGAAAATGTTAAACCTTGCATCAAAGATCTCTTTTTTAACAAACTGATT 705878 Query 21572 -GACGCAAA-TGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTT 21629 ||| ||| | | |||||| || || | |||| || | | ||| |||| |||| Sbjct 705877 ATACGAAAACTTCCACTGAAA--AATATACTTTCAAATGCTACGAGTGCTACTAGACGTT 705820 Query 21630 CACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAA 21689 | || ||||| || |||||||||| ||||||| |||||| | ||||| Sbjct 705819 TTTCAAAT---GATTCATT------TATCCATTTTAAAGCCCATTCTGCCTTCTTTTTAA 705769 Query 21690 TACAATCAATTGTATCAATAGCTTTTAAAAGATGATTTTT 21729 ||| ||||| ||||| || || ||||| | || ||| Sbjct 705768 CACATGGGATTGTTTCAATTGCATTAAAAAGTTTATCTTT 705729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900527400840