Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4 178 2e-39 seq2 123 3e-23 seq6 91.5 2e-13 >seq4 Length=5450249 Score = 178 bits (196), Expect = 2e-39 Identities = 561/864 (65%), Gaps = 33/864 (4%) Strand=Plus/Minus Query 62897 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62956 ||| || |||||||||||||| | |||| | | ||||| || ||||| || || Sbjct 1505007 AGAGGCAAGATTACAAACGGCGATTTCATCTGGTGATGTGTATTGAATGATCTCGGTACA 1504948 Query 62957 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63016 ||||||||||| | || || |||||||| | |||||| || ||||| ||||| Sbjct 1504947 AAGATTACTACTACTAATGGTACCTAAATTCTTTTGATTGGATTTAGCATTACAGGCATC 1504888 Query 63017 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63076 ||| || | ||||||||||||||||||||||| ||||| || ||||| || ||| | Sbjct 1504887 CTTGTACAAAATGAATGGAGTACCAGTTTCAACTTGAGACTCCATAATGGCGAACCAAAG 1504828 Query 63077 GACTCGAGCCTTTATTATAGATTT--GTATCTC--------CTTTCTCTTTCGTATAGTG 63126 || |||| || || | | | | | | || ||| | |||| |||| | Sbjct 1504827 TTCTTGAGCTTTAATGACACGTCTTGGGAGGTCAGGTGTTGCTTCGTATTTCAAATAGAG 1504768 Query 63127 TATACAATCGTTC----GAACTCGTCTCCCCAA-ACATTGTCCAATCCAGGACATTCATC 63181 || || |||| || || || ||| || | || | ||||| Sbjct 1504767 AGCACGAT-GTTCCTCTGAGTGAGTTTCAGCAAGACCTGGTGC-----------TTCATT 1504720 Query 63182 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63241 ||||| | | | ||| || || | | | || |||| |||||| | |||| || Sbjct 1504719 TGGACAAAAGAGGGCCCAATCGCCATTTTGTTCGACACGTTCCATAAAAATATCACTAAC 1504660 Query 63242 CCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAA 63300 ||||||||| ||| ||||||||||| | ||| || || || || || || || || | Sbjct 1504659 CCAAAGAGC-ATAGAATAGATCTCTAGCTCTCATCTCTTCCTTACCAGTGTTTTTCTTTA 1504601 Query 63301 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63360 |||| | || | | | ||||| ||||| ||||||||||| | ||| | | || Sbjct 1504600 GATCAATAAATTCAAAGACATCAGCGTGCCATGGTTCCAAGTAAACGGCAAAGGCACCCT 1504541 Query 63361 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63420 | ||| || || ||||| | ||| | ||| || | ||| |||| | | ||||| Sbjct 1504540 TTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGAAAACACGAAGCATTG 1504481 Query 63421 GAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT 63480 | | | ||| || | ||||||||||||| ||||| ||| | |||||||| | Sbjct 1504480 GCACCAAACCATTGCTTGTACCATTGGTACCACGAATATAACTTTGAGCAGCACGAATCT 1504421 Query 63481 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63540 || || || | ||| || || || || | || || || | ||| ||| |||| || | Sbjct 1504420 TATGAACTGCAATACCAATACCACCGGCACTCTTTGAAATGAGTGCACATTGTTTCAAAG 1504361 Query 63541 TGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT- 63599 ||||||| ||||| || || ||| || |||| | || | ||||| |||||| Sbjct 1504360 TGTCATAAATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACAAGATGACATTT 1504301 Query 63600 -TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63658 |||||| | || || || || |||| || || | || || || ||| |||| || Sbjct 1504300 GTGGTGATG--GTGTACCTGCGTTGAATAGAGTTGGTGTGGCATGAGTGAACAATTTCTC 1504243 Query 63659 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 63718 ||| | | ||||| || | || || || || | || ||| || || | | Sbjct 1504242 AGACAAACGTTTGTAGGTGTTGATGGCAGATTCGAGGTCTTCGCCATGGATACCAATGGA 1504183 Query 63719 GACACGCATTAACATGTGCTGAGG 63742 ||||||||| |||||||| || || Sbjct 1504182 GACACGCATCAACATGTGTTGTGG 1504159 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||||||||| | | | | || || ||||| ||||||||||| || || |||| | Sbjct 1505942 GTGAATTGAATTGCATCAGCGGCAGGACGAGTACGAAGATAGTACATACCAGTCTTTAAA 1505883 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || ||||| ||| |||||||| || ||||| | | | | || || || || Sbjct 1505882 CCTTTCTTCCATGAGTAGAAATGCATTGAGGTGAGTTTAGCAAAGGTTGGTTCAGCAATG 1505823 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 | ||| | | |||||||||||||||||| || || | || |||||||| | ||| Sbjct 1505822 AAAACATTGAAACTTTGACTTTGATCGATGAAAGCACCACGATCAGCAGCCATATCGATG 1505763 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 62209 | || |||| | |||||||||| |||||||| Sbjct 1505762 AGAGTTCTTTGACGGATTTCCCAAACTGTTTTATA 1505728 >seq2 Length=8484197 Score = 123 bits (136), Expect = 3e-23 Identities = 207/295 (70%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 |||||||||||| || || | ||| ||||| | ||||| ||| || ||||| || | Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || |||||| || | |||||| | ||||||||| ||| || |||| || || Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 2356725 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCATGT 33480 || || || ||||| ||||| |||| | | ||| | || | ||| |||| | Sbjct 2356724 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGC--AAATGAATCTGAATCATTT 2356667 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| || ||||| || ||||||||||| | ||| || || ||||| || |||||| Sbjct 2356666 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 2356607 Query 33541 AAGAGATAGtttttttCATTAC-TATCTTTAACATAAGTATCGATCAAAAGACTA 33594 || | || | ||| || | ||||||||| |||||| || || ||||||||| Sbjct 2356606 AATA-ATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 2356553 Score = 123 bits (136), Expect = 3e-23 Identities = 207/295 (70%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 |||||||||||| || || | ||| ||||| | ||||| ||| || ||||| || | Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || |||||| || | |||||| | ||||||||| ||| || |||| || || Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 3675061 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCATGT 33480 || || || ||||| ||||| |||| | | ||| | || | ||| |||| | Sbjct 3675062 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGC--AAATGAATCTGAATCATTT 3675119 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| || ||||| || ||||||||||| | ||| || || ||||| || |||||| Sbjct 3675120 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 3675179 Query 33541 AAGAGATAGtttttttCATTAC-TATCTTTAACATAAGTATCGATCAAAAGACTA 33594 || | || | ||| || | ||||||||| |||||| || || ||||||||| Sbjct 3675180 AATA-ATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 3675233 Score = 100 bits (110), Expect = 4e-16 Identities = 115/150 (77%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 ||||| |||| ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 2356428 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 2356369 Query 33652 TCGGTAATCTGTACTTCTGTACA-AAATC--GTTCCGCCAAATTTTCATTCACTATTCCG 33708 || | ||| |||||||| | ||| ||||| ||| || | |||||||| || || || Sbjct 2356368 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTT--GCAAGGTTTTCATTTACAATACCA 2356312 Query 33709 TCACTGGCTGCAAAAAACGCCAATACATGT 33738 ||| || |||||||| ||||| |||||| Sbjct 2356311 TCAGATGCAGCAAAAAATGCCAAAACATGT 2356282 Score = 100 bits (110), Expect = 4e-16 Identities = 115/150 (77%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 ||||| |||| ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 3675358 CTATAAGTTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCT 3675417 Query 33652 TCGGTAATCTGTACTTCTGTACA-AAATC--GTTCCGCCAAATTTTCATTCACTATTCCG 33708 || | ||| |||||||| | ||| ||||| ||| || | |||||||| || || || Sbjct 3675418 TCTGGAATTTGTACTTCAG-ACATAAATCTAGTT--GCAAGGTTTTCATTTACAATACCA 3675474 Query 33709 TCACTGGCTGCAAAAAACGCCAATACATGT 33738 ||| || |||||||| ||||| |||||| Sbjct 3675475 TCAGATGCAGCAAAAAATGCCAAAACATGT 3675504 >seq6 Length=3602379 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 33475 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 |||| |||||| ||| |||||| || ||||||||||| ||||| || || ||||| || Sbjct 705808 TCATTTATCCATTTTAAAGCCCATTCTGCCTTCTTTTTAACACATGGGATTGTTTCAATT 705749 Query 33535 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33594 |||||||| || | | ||| ||| |||| |||| | |||| || || ||||||||| Sbjct 705748 GCATTAAAAAGTTTATCTTTAATATTTTTATCCTTAATACAAGTTTCAATTAAAAGACTA 705689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946880739560