Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 4e-14 >seq3 Length=6357299 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 |||||||| | || || ||||||||||||||||| || | || || || ||| Sbjct 2332273 ACTAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGATAAAGTACGACCATCTTCT 2332214 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 | || || ||||| ||||||| | || ||||| || || || |||||||| || || Sbjct 2332213 AATTGTTTACCTGCAAAGATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTTATC-TTG 2332155 Query 131146 ATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 | ||| |||| | | | ||| | | |||| | | || | || | || | |||||| Sbjct 2332154 AATTTTAGCTTTAACGTTCTCGATATTATCTGAGCCTTCAACTTCTAATGTGATGGTTTT 2332095 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || |||||||| |||||||| ||||| Sbjct 2332094 ACCAGTAAGAGTTTTAACGAAAATTTGCAT 2332065 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 |||||||| | || || ||||||||||||||||| || | || || || ||| Sbjct 2332045 ACTAAATGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGAGAGAGTACGACCATCTTCT 2331986 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 | || || |||||| | || | ||| || ||||| || ||||| |||||||| || | Sbjct 2331985 AATTGTTTACCTGCGAAAATAAGACGTTGTTGGTCTGGTGGGATACCTTCTTTATCTTGG 2331926 Query 131146 ATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 ||||| |||| | | | ||| | |||| | || | || | || | |||||| Sbjct 2331925 ATTTT-AGCTTTAACATTCTCGATGTTATCAGAACCTTCAACTTCTAATGTGATGGTTTT 2331867 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || |||||||| |||||||| ||||| Sbjct 2331866 ACCAGTGAGAGTTTTAACGAAAATTTGCAT 2331837 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| | | |||||||| | || || ||||||||||| || ||||| Sbjct 2332519 CCACCTCTCAATCTTAATACTAAATGAAGAGTTGATTCCTTTTGAATATTATAATCTGAT 2332460 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| || || ||||| ||||||| | || || || || ||| Sbjct 2332459 AAAGTACGACCATCTTCTAATTGTTTACCTGCAAAGATTAATCTTTGTTGATCTGGTGGG 2332400 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGAC--TCG 131184 || |||||||| || |||||| |||| | | | ||| | | |||| || || || Sbjct 2332399 ATACCTTCTTTATCTTGGATTTT-AGCTTTAACATTCTCGATATTATC--TGAACCTTCA 2332343 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | || | |||||||| || |||||||| |||||||| ||||| Sbjct 2332342 ACTTCCAAAGTGATTGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 2332293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012558093440