Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4 194 2e-44 seq2 132 6e-26 seq6 91.5 2e-13 seq5 91.5 2e-13 >seq4 Length=5450249 Score = 194 bits (214), Expect = 2e-44 Identities = 569/869 (65%), Gaps = 31/869 (4%) Strand=Plus/Minus Query 62746 TGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 62805 ||| | ||| || |||||||||||||| | |||| | | ||||| || ||||| Sbjct 1505013 TGCTATAGAGGCAAGATTACAAACGGCGATTTCATCTGGTGATGTGTATTGAATGATCTC 1504954 Query 62806 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 62865 || ||||||||||||| | ||||| |||||||| | |||||| || ||||| Sbjct 1504953 GGTACAAAGATTACTACTACTAATGGTACCTAAATTCTTTTGATTGGATTTAGCATTACA 1504894 Query 62866 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 62925 |||||||| || | ||||||||||||||||||||||| ||||| || ||||| || Sbjct 1504893 GGCATCCTTGTACAAAATGAATGGAGTACCAGTTTCAACTTGAGACTCCATAATGGCGAA 1504834 Query 62926 CCAGACGACTCGAGCCTTTATTATAGATTT------GT-ATCTCTT--TTC-TCTTTCGT 62975 ||| | || |||| || || | | | | || | | || ||| | |||| Sbjct 1504833 CCAAAGTTCTTGAGCTTTAATGACACGTCTTGGGAGGTCAGGTGTTGCTTCGTATTTCAA 1504774 Query 62976 ATAGTGTATACAATCGTTC----GAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACAT 63031 |||| | || || |||| || || || ||| | || || | Sbjct 1504773 ATAGAGAGCACGAT-GTTCCTCTGAGTGAGTTTCAGCAA----------GACCTGGTGCT 1504725 Query 63032 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 63091 |||| ||||| | | | ||| || || | | | || |||| |||||| | |||| Sbjct 1504724 TCATTTGGACAAAAGAGGGCCCAATCGCCATTTTGTTCGACACGTTCCATAAAAATATCA 1504665 Query 63092 GGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 63150 || ||||||||| ||| ||||||||||| | ||| || || || || || || || Sbjct 1504664 CTAACCCAAAGAGC-ATAGAATAGATCTCTAGCTCTCATCTCTTCCTTACCAGTGTTTTT 1504606 Query 63151 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63210 || ||||| | || | | | ||||| ||||| ||||||||||| | ||| | | Sbjct 1504605 CTTTAGATCAATAAATTCAAAGACATCAGCGTGCCATGGTTCCAAGTAAACGGCAAAGGC 1504546 Query 63211 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63270 || | ||| || || ||||| | ||| | ||| || | ||| |||| | | Sbjct 1504545 ACCCTTTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGAAAACACGAAG 1504486 Query 63271 CATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACG 63330 |||||| | | ||||||| |||||||||||| || ||||| ||| | ||||| Sbjct 1504485 CATTGGCACCAAACCATTGCTTGTACCATTGGTACCACGAATATAACTTTGAGCAGCACG 1504426 Query 63331 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63390 ||| ||| || || | ||| || || || || | || || || | ||| ||| |||| Sbjct 1504425 AATCTTATGAACTGCAATACCAATACCACCGGCACTCTTTGAAATGAGTGCACATTGTTT 1504366 Query 63391 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 63450 || || ||||| || || || || ||| ||| |||| | || | ||||| || Sbjct 1504365 CAAAGTGTCATAAATACCATCGATTGAATCCTCCTTCATTTGAACCAAGAAACAAGATGA 1504306 Query 63451 CATT--TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCAT 63508 |||| |||||| | || || || || |||| || || | || ||||| ||| || Sbjct 1504305 CATTTGTGGTGATG--GTGTACCTGCGTTGAATAGAGTTGGTGTGGCATGAGTGAACAAT 1504248 Query 63509 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCT 63568 || ||||| | | ||||| || | || || || || | || ||| || || Sbjct 1504247 TTCTCAGACAAACGTTTGTAGGTGTTGATGGCAGATTCGAGGTCTTCGCCATGGATACCA 1504188 Query 63569 ACTGCGACACGCATTAACATGTGCTGAGG 63597 | | ||||||||| |||||||| || || Sbjct 1504187 ATGGAGACACGCATCAACATGTGTTGTGG 1504159 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||||||||| | | | | || || ||||| ||||||||||| || || |||| | Sbjct 1505942 GTGAATTGAATTGCATCAGCGGCAGGACGAGTACGAAGATAGTACATACCAGTCTTTAAA 1505883 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || ||||| ||| |||||||| || ||||| | | | | || || || || Sbjct 1505882 CCTTTCTTCCATGAGTAGAAATGCATTGAGGTGAGTTTAGCAAAGGTTGGTTCAGCAATG 1505823 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 | ||| | | |||||||||||||||||| || || | || |||||||| | || Sbjct 1505822 AAAACATTGAAACTTTGACTTTGATCGATGAAAGCACCACGATCAGCAGCCATATCGATG 1505763 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 62064 | || |||| | |||||||||| |||||||| Sbjct 1505762 AGAGTTCTTTGACGGATTTCCCAAACTGTTTTATA 1505728 >seq2 Length=8484197 Score = 132 bits (146), Expect = 6e-26 Identities = 209/295 (71%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 |||||||||||| || |||| ||| ||||| | ||||||||| || ||||| || | Sbjct 2356844 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 2356785 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779 || |||||| || | |||||| | ||||||||| || ||| |||| || || Sbjct 2356784 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 2356725 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCATGT 32837 || || || ||||| ||||| |||| | | ||| | || | ||| |||| | Sbjct 2356724 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGC--AAATGAATCTGAATCATTT 2356667 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 ||||| || ||||| || ||||||||||| | ||| || ||||| || || |||||| Sbjct 2356666 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 2356607 Query 32898 AAGAGATAGtttttttCATTAC-TATCTTTAACATATGTATCAATCAAAAGACTA 32951 || | || | ||| || | ||||||||| ||| || ||||| ||||||||| Sbjct 2356606 AATA-ATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 2356553 Score = 132 bits (146), Expect = 6e-26 Identities = 209/295 (71%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 |||||||||||| || |||| ||| ||||| | ||||||||| || ||||| || | Sbjct 3674942 ACATGCGAAATCACAATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAA 3675001 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779 || |||||| || | |||||| | ||||||||| || ||| |||| || || Sbjct 3675002 ACCTTGCATTAAACCTCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAA 3675061 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TCATGT 32837 || || || ||||| ||||| |||| | | ||| | || | ||| |||| | Sbjct 3675062 TATACCCTCAACTGCTGCAAATGCAACCAAACGTTCTGC--AAATGAATCTGAATCATTT 3675119 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 ||||| || ||||| || ||||||||||| | ||| || ||||| || || |||||| Sbjct 3675120 ATCCATCTTAATGCCCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTA 3675179 Query 32898 AAGAGATAGtttttttCATTAC-TATCTTTAACATATGTATCAATCAAAAGACTA 32951 || | || | ||| || | ||||||||| ||| || ||||| ||||||||| Sbjct 3675180 AATA-ATTTATCTTTAGTTTGCTTATCTTTAATATAAGTTTCAATTAAAAGACTA 3675233 >seq6 Length=3602379 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 |||| |||||| ||| |||||| || ||||||||||| ||||| || ||||| || || Sbjct 705808 TCATTTATCCATTTTAAAGCCCATTCTGCCTTCTTTTTAACACATGGGATTGTTTCAATT 705749 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 |||||||| || | | ||| ||| |||| |||| | | || ||||| ||||||||| Sbjct 705748 GCATTAAAAAGTTTATCTTTAATATTTTTATCCTTAATACAAGTTTCAATTAAAAGACTA 705689 >seq5 Length=5125352 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 80784 GTGATAGGTATTGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG 80843 || || |||||||||||||| || || || |||||| |||| |||| |||| || Sbjct 2508691 GTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGACTTG 2508632 Query 80844 GCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTCGATGGTACATTTCAACGTAAACCG 80903 ||||| |||| |||| |||||| | |||||||| |||||||| || ||| | ||||| Sbjct 2508631 GCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAAGAAAACCA 2508572 Query 80904 TT-TAATAATATCTTGGATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCAGT 80962 || ||| | || | ||| | | || ||||| | ||| ||||||| || Sbjct 2508571 TTCCAATCA-GTCATTGATTTAGTATCAAAGGCTGAATATATTACAAAGTTAACTGCCGT 2508513 Query 80963 GTGTATGAAATGCTTTAAGGAGGCTTCCTTTTCTAAACG 81001 |||||| |||| || || || ||||||| ||||| Sbjct 2508512 TTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACG 2508474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631675263600