Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20discoideum_20[refseq_20GCF_5F000004695.1_202009-08- 24] 41 sequences; 34,204,973 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 158 1e-33 >seq2 Length=8484197 Score = 158 bits (174), Expect = 1e-33 Identities = 178/238 (75%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 93106 ATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165 ||||||||||||||| ||||| || || ||||| |||||||||||| | | | || Sbjct 2356829 ATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAAACCTTGCATTAAACC 2356770 Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225 || || || | ||||||||||||| |||||| ||| ||||||||||| || || || Sbjct 2356769 TCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAATATACCCTCAACTGC 2356710 Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGC 93285 ||||||||| || | |||||| ||||| | |||| | | |||||| |||| || Sbjct 2356709 TGCAAATGCAACCAAACGTTCTGCAAATGAATCTGAATCA---TTTATCCATCTTAATGC 2356653 Query 93286 CCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCT 93343 ||| || || || || |||||||| || | |||||| || || ||||||| | |||| Sbjct 2356652 CCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTAAATAATTTATCT 2356595 Score = 158 bits (174), Expect = 1e-33 Identities = 178/238 (75%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 93106 ATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165 ||||||||||||||| ||||| || || ||||| |||||||||||| | | | || Sbjct 3674957 ATGTAAACCTTCGTCACGTGAAATTAATTCATTTGAAAATGTTAAACCTTGCATTAAACC 3675016 Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225 || || || | ||||||||||||| |||||| ||| ||||||||||| || || || Sbjct 3675017 TCTCTTTTTCAACCAAAATATTGAACAAAAACTTCCACTGAAAAATATACCCTCAACTGC 3675076 Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGC 93285 ||||||||| || | |||||| ||||| | |||| | | |||||| |||| || Sbjct 3675077 TGCAAATGCAACCAAACGTTCTGCAAATGAATCTGAATCA---TTTATCCATCTTAATGC 3675133 Query 93286 CCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCT 93343 ||| || || || || |||||||| || | |||||| || || ||||||| | |||| Sbjct 3675134 CCATTCTGCCTTCTTTTTAATACATGGAATTGTTTCAATTGCATTAAATAATTTATCT 3675191 Score = 113 bits (124), Expect = 5e-20 Identities = 138/185 (75%), Gaps = 5/185 (3%) Strand=Plus/Minus Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 |||||||||| | ||| || ||||||||||| || || ||||||||||| ||||| | | Sbjct 2356421 TTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAA 2356362 Query 93450 TCTGCACTTCTTGAGA-AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 | || ||||| || | |||||| | | || |||||||| || |||||||| ||||| Sbjct 2356361 TTTGTACTTC-AGACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATCAGATGCA 2356303 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTA---TCC 93565 |||||||| ||||| | ||| || ||||| |||| |||| | | ||| ||| Sbjct 2356302 GCAAAAAATGCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAATTTATATTCC 2356243 Query 93566 CAATC 93570 ||||| Sbjct 2356242 CAATC 2356238 Score = 113 bits (124), Expect = 5e-20 Identities = 138/185 (75%), Gaps = 5/185 (3%) Strand=Plus/Plus Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 |||||||||| | ||| || ||||||||||| || || ||||||||||| ||||| | | Sbjct 3675365 TTTCAGAATGTATATTTTCAATTGCAATTTGAAAACCATAGAAACATCTTGCTTCTGGAA 3675424 Query 93450 TCTGCACTTCTTGAGA-AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 | || ||||| || | |||||| | | || |||||||| || |||||||| ||||| Sbjct 3675425 TTTGTACTTC-AGACATAAATCTAGTTGCAAGGTTTTCATTTACAATACCATCAGATGCA 3675483 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTA---TCC 93565 |||||||| ||||| | ||| || ||||| |||| |||| | | ||| ||| Sbjct 3675484 GCAAAAAATGCCAAAACATGTGAGATGAAATGACGTTCATTATCTGTTAATTTATATTCC 3675543 Query 93566 CAATC 93570 ||||| Sbjct 3675544 CAATC 3675548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860514608840